View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12306_low_5 (Length: 331)
Name: NF12306_low_5
Description: NF12306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12306_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 9156197 - 9155898
Alignment:
| Q |
15 |
ctttgcagaaagatggattgaagggtcgtcaagttactgatgctacaagggtattctaatttgtttttggattattgctttgtcttcgtggttttcttgt |
114 |
Q |
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| T |
9156197 |
ctttgcagaaagatggattgaagggtcgtcaagttactgatgctacaagggtattctaatttgtttttggattattgctttgtcttcgtggttttcttgt |
9156098 |
T |
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| Q |
115 |
attaatattgaagaatctatgaagcacatacacgacgacggaaatacactggcacatcgacattagaagtaatttacgaaaataagaaaattgaatgtaa |
214 |
Q |
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| T |
9156097 |
attaatattgaagaatctatgaagcacatacacgacgacggaaacacaccggcacatcgacattagtagtaatttaagaaaataagaaaattgaatgtaa |
9155998 |
T |
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| Q |
215 |
atcacatgtgtcggtgtcggacactgagatgtgtcaaataccagagacatatcttcaatcagaagtgtctatgctaaatagagaataactgcctaaaaac |
314 |
Q |
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| T |
9155997 |
atcac--gtgtcggtgtcggacactgagatgtgtcagataccagagacatatcttcaatcagaagtgtctatgctaaatagagaataactgcctaaaaac |
9155900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 9167843 - 9167748
Alignment:
| Q |
15 |
ctttgcagaaagatggattgaagggtcgtcaagttactgatgctacaagggtattctaatttgtttttggattattgctttgtcttcgtggttttc |
110 |
Q |
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| T |
9167843 |
ctttgaagaaggatggattgaagggtcgtcaagttactgattccacaagggtattgaattttgatcttggattattgctttgtctttgtggctttc |
9167748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 40876393 - 40876349
Alignment:
| Q |
182 |
agtaatttacgaaaataagaaaattgaatgtaaatcacatgtgtc |
226 |
Q |
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| T |
40876393 |
agtaattaaagaaaatatcaaaattgaatgtaaatcacatgtgtc |
40876349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 7038725 - 7038765
Alignment:
| Q |
184 |
taatttacgaaaataagaaaattgaatgtaaatcacatgtg |
224 |
Q |
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| T |
7038725 |
taatttaagaaaatgacaaaattgaatgtaaatcacatgtg |
7038765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 13280186 - 13280218
Alignment:
| Q |
201 |
aaaattgaatgtaaatcacatgtgtcggtgtcg |
233 |
Q |
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| T |
13280186 |
aaaattgaatgtaaatcacatgtgtcagtgtcg |
13280218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 4747842 - 4747870
Alignment:
| Q |
201 |
aaaattgaatgtaaatcacatgtgtcggt |
229 |
Q |
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| T |
4747842 |
aaaattgaatgtaaatcacatgtgtcggt |
4747870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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