View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12307_high_4 (Length: 420)
Name: NF12307_high_4
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12307_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 404
Target Start/End: Original strand, 41731322 - 41731720
Alignment:
| Q |
6 |
agaagcagagatggtcgagatgttgcagatagctatgtcatgtgttgtaagaatgcctgatcagaggcctaagatgtcagaagttgtgaagatgatagaa |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41731322 |
agaagaagagatggtcgagatgttgcagatagctatgtcatgtgttgtaagaatgcctgatcagaggcctaagatgtcagaagttgtgaagatgatagaa |
41731421 |
T |
|
| Q |
106 |
aatgtgagacagattgataatacacagactcagccatcatctgagaatcaaggaggagttaaattatcatctcaaactgattatgataatatcaactccc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
41731422 |
aatgtgagacagattgataatacacagactcagccatcatctgagaatcaaggaggagttaaattatcatctcaaactgattatgataacattaactccc |
41731521 |
T |
|
| Q |
206 |
cttcttccacttcatcccccttaccaaaaggaagtgaatgaaaacaaagtaaagttgtagccttttatttcatttgagtgtatctgttctacgttcttaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41731522 |
cttcttccacttcatcccccttaccaaaaggaagtgaatgaaaacaaagtaaagttgtagccttttatttcatttgagtgtatctgttccacgttcttaa |
41731621 |
T |
|
| Q |
306 |
caagagcaagatgattaactacttttatttttgtcannnnnnnnnagcttcctgaattagcaccttcttggtgcaatagtcaggtttattacaaattac |
404 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41731622 |
caagagcaagatgattaactactgttatttttgtcatttttttttagcttcctgaattagcaccaccttggtgcaatagtcaggtttattacaaattac |
41731720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 2385016 - 2384898
Alignment:
| Q |
6 |
agaagcagagatggtcgagatgttgcagatagctatgtcatgtgttgtaagaatgcctgatcagaggcctaagatgtcagaagttgtgaagatgatagaa |
105 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||| |||||||||| | ||| ||||||||||| || |||| |||||||||| |||| |||||||||||| |
|
|
| T |
2385016 |
agaagaagagatggtagagatgttacagatagccatgtcatgtgctacaaggatgcctgatcaaagacctatgatgtcagaaattgtaaagatgatagaa |
2384917 |
T |
|
| Q |
106 |
aatgtgagacagattgata |
124 |
Q |
| |
|
||||| || ||| |||||| |
|
|
| T |
2384916 |
aatgtaaggcagcttgata |
2384898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University