View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12307_high_5 (Length: 399)
Name: NF12307_high_5
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12307_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 48187464 - 48187088
Alignment:
| Q |
18 |
ttttttaaagctaaaacaaatgcatcctttattattttatatttcaaatgttggatacagnnnnnnnnn-gtctaatatttggttcttaatagtattatt |
116 |
Q |
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| T |
48187464 |
ttttttaaagttaaaacaaatgcatcctttattattttatatttcaaatgttggatacagaaaaaaaaaagtctaatatttggttcttaatagtattatt |
48187365 |
T |
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| Q |
117 |
gctgaatttttaaattgttcatgacactccctttctcatgctaggtcccctacacaatttatcaacccacatgtttg--------atgtggagattcaac |
208 |
Q |
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| T |
48187364 |
gctgaatttttaaacagttcatgacactccctttctcatgctaggtcccctacacaatttatcaaaccacatgtttgtacaattgatgtggagatttaac |
48187265 |
T |
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| Q |
209 |
ttacctatatgaaggtaaagtgtacgtagccagatgacagttgcacaatatttcttgcgaattttctctcagtaatttgtcgataacaagagattaaagc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48187264 |
ttacctatatgaaggtaaagtgtacgtagccagatgacagttgcacaatatttcttgcgaattttctctcagtaatttgtcgataacaagagattaaagc |
48187165 |
T |
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| Q |
309 |
ctataatattgggtttggtta-cattgtatattccatattttatccaatttagcgtgggactcttaactatatatat |
384 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48187164 |
ctataatattgggtttggttatcattgtatattccatatttcatccaatttagcgtgggactcttaactatatatat |
48187088 |
T |
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