View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12307_high_6 (Length: 336)
Name: NF12307_high_6
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12307_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 29837534 - 29837228
Alignment:
| Q |
17 |
aagaatctctatgattcatagaaatgttgattcattttattgaagtattatgatattgaaaaccacttacaaggaagctaagagattaacacactaaaaa |
116 |
Q |
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| T |
29837534 |
aagaatctctatgattcatagaaatgttgattcattttattgaagtattatgatattgaaaaccacttacaaggaagctaagagattaacac--taaaaa |
29837437 |
T |
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| Q |
117 |
gtcacaaacaagactaattaaatgccaagttgccaaccaacaaaaagtggtattaggttgctcacgagaagcattacatttaacttataatggcactctc |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29837436 |
gtcactaacaagactaattaaatgccaagttgccaaccaacaaaaagtagtattaggttgctcacgagaagcattacatttaacttataatggcactctc |
29837337 |
T |
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| Q |
217 |
cattctccacatcattactttatataaacaaacaaatattttattcattagcattatttttgtacccttttttaggctcttgtcatcatcaccattaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29837336 |
cattctccacatcattactttatataaacaaacaaatattttattcattagcattatttttgtacccttttttaggctcttgtcatcatcaccattaatg |
29837237 |
T |
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| Q |
317 |
attgtctct |
325 |
Q |
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||||||||| |
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| T |
29837236 |
attgtctct |
29837228 |
T |
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