View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12307_high_9 (Length: 219)
Name: NF12307_high_9
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12307_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11720110 - 11720294
Alignment:
| Q |
18 |
actaagagcagcaatagcaacaacattacaatttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtact |
117 |
Q |
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| T |
11720110 |
actaagagcagcaatagcaacaacattacaatttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtact |
11720209 |
T |
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| Q |
118 |
ttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcac |
202 |
Q |
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| T |
11720210 |
ttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcac |
11720294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 11671980 - 11672159
Alignment:
| Q |
18 |
actaagagcagcaatagcaacaacattacaatttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtact |
117 |
Q |
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|||||||||||| || |||| |||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
11671980 |
actaagagcagcgattgcaataacattgtcatgtccgatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttatgtagaact |
11672079 |
T |
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| Q |
118 |
ttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagt |
197 |
Q |
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| T |
11672080 |
ttactaaagtggcggttttctggatttgaagtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagt |
11672159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 11729222 - 11729400
Alignment:
| Q |
18 |
actaagagcagcaatagcaacaacatta-ca-atttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagta |
115 |
Q |
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| T |
11729222 |
actaagagcagcaatggcaacaacgttgtcatatatccaatatttctttgatagtgaatgagctctataggaaacacaaacacatctcccttttgtagaa |
11729321 |
T |
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| Q |
116 |
ctttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttc |
194 |
Q |
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| T |
11729322 |
ctttcctagagtgccggttttctggatttgaagtgatgaatccaacttccaatgtgccttcaagaacagtgaatatttc |
11729400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 11680867 - 11681046
Alignment:
| Q |
18 |
actaagagcagcaatagcaacaacattacaatttccaatatttctttgatagtgaatgagccctataggaa---acacaaacacatctcccttttgtagt |
114 |
Q |
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||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
11680867 |
actaagagcagcaatggcaacaacattgttgtatccaatatttctttgatagtgaatgagacctataggaagaaacacaaacacatctcccttatgtaga |
11680966 |
T |
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| Q |
115 |
actttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttc |
194 |
Q |
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| T |
11680967 |
actttacaaaagtggcggttttctgggtttgaagtgatgaatccaacttctaatgttccttcaagaacagtgcatatttc |
11681046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 11693870 - 11693693
Alignment:
| Q |
20 |
taagagcagcaatagcaacaacattacaatttccaatatttctttgatagtgaatgagccctatagg---aaacacaaacacatctcccttttgtagtac |
116 |
Q |
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||||||||||||| ||||||||||| | |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||| || |
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| T |
11693870 |
taagagcagcaatggcaacaacattgttgtatccaatatttctttgatagtgaataagacctataggtagaaacacaaacacatctcccttatgtagaac |
11693771 |
T |
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| Q |
117 |
tttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttc |
194 |
Q |
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||| ||||||||||||||| || ||||| |||||||||||||||||||| || ||||| ||||||||| ||||||| |
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| T |
11693770 |
tttacaaaagtggcggttttctgggtttgaagtgatgaatccaacttctaatgttccttcaagaacagtgcatatttc |
11693693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 11712867 - 11712717
Alignment:
| Q |
51 |
tccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgtg |
150 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||| ||||| ||||||||||||||| || ||||| ||| |
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| T |
11712867 |
tccaatatttctttgatagtgaatgagacctatag-aaacacaaacacatctctcttatgtagaactttacgaaagtggcggttttctgggtttgaagtg |
11712769 |
T |
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| Q |
151 |
atgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcac |
202 |
Q |
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||||||||||||||||| || ||||| |||||||| ||||||||||| |||| |
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| T |
11712768 |
atgaatccaacttctaatgttccttcaagaacagttaatatttcagtagcac |
11712717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 7662077 - 7662253
Alignment:
| Q |
18 |
actaagagcagcaatagcaacaacattacaatttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtact |
117 |
Q |
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||||||||| ||||| |||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
7662077 |
actaagagctgcaatggcaacaacatgagcatttcctatatttctttgatagtgaatgagtcctataggaaacacaaacacatctcccttttgtagaact |
7662176 |
T |
|
| Q |
118 |
ttcttaaagtggcggttttcaggatttgacgtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttc |
194 |
Q |
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|| |||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
7662177 |
tttctaaagtggcggttttccgggtttgaagtgatgaatccaacttctaaagtgccttcaagaacagtgaatatttc |
7662253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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