View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12307_low_1 (Length: 600)
Name: NF12307_low_1
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12307_low_1 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 30264185 - 30264764
Alignment:
| Q |
1 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264185 |
ccttcctcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatactccatccaaaatcagagattgaattgaaaagggagaata |
30264284 |
T |
|
| Q |
101 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264285 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
30264384 |
T |
|
| Q |
201 |
atgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264385 |
atgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatac |
30264484 |
T |
|
| Q |
301 |
ttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30264485 |
ttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattg |
30264584 |
T |
|
| Q |
401 |
actcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatataca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264585 |
actcatttttagggaacactggaaccttaaaatgatcttttggatttacctctacttttttccatttcatatttccatctttatctctcacctatataca |
30264684 |
T |
|
| Q |
501 |
tggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaaa |
580 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264685 |
tggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaa |
30264764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 30288003 - 30287424
Alignment:
| Q |
1 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30288003 |
ccttcctcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatactccatccaaaatcagagattgaattgaaaagggagaata |
30287904 |
T |
|
| Q |
101 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287903 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
30287804 |
T |
|
| Q |
201 |
atgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287803 |
atgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatac |
30287704 |
T |
|
| Q |
301 |
ttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30287703 |
ttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattg |
30287604 |
T |
|
| Q |
401 |
actcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatataca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287603 |
actcatttttagggaacactggaaccttaaaatgatcttttggatttacctctacttttttccatttcatatttccatctttatctctcacctatataca |
30287504 |
T |
|
| Q |
501 |
tggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaaa |
580 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287503 |
tggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaa |
30287424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 30271079 - 30271576
Alignment:
| Q |
1 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
30271079 |
ccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctccatccaaaatcagagaaggaattgaaaaaggagaata |
30271178 |
T |
|
| Q |
101 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
200 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30271179 |
tggttgaaggaaaccacttgaaaaaacctttcttgggagataacaattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctct |
30271278 |
T |
|
| Q |
201 |
atgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatac |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||| ||||||||||| |
|
|
| T |
30271279 |
ttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcatttcttgttggatat |
30271378 |
T |
|
| Q |
301 |
ttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattg |
400 |
Q |
| |
|
|| || | ||||||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
30271379 |
ttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattg |
30271478 |
T |
|
| Q |
401 |
actcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
498 |
Q |
| |
|
| ||| |||||||||| | |||||| | | |||||||| || || |||||||| |||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
30271479 |
attcacttttagggaatattggaacgtgcatatgatcttcaggcttcacctctacctttttccatttcattttgccatctttgtctctcacctatata |
30271576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 30281110 - 30280613
Alignment:
| Q |
1 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
30281110 |
ccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctccatccaaaatcagagaaggaattgaaaaaggagaata |
30281011 |
T |
|
| Q |
101 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
200 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30281010 |
tggttgaaggaaaccacttgaaaaaacctttcttgggagataacaattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctct |
30280911 |
T |
|
| Q |
201 |
atgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatac |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| |
|
|
| T |
30280910 |
ttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatat |
30280811 |
T |
|
| Q |
301 |
ttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattg |
400 |
Q |
| |
|
|| || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
30280810 |
ttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattg |
30280711 |
T |
|
| Q |
401 |
actcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
498 |
Q |
| |
|
| ||| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
30280710 |
attcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata |
30280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 30304146 - 30304643
Alignment:
| Q |
1 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
30304146 |
ccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctccatccaaaatcagagaaggaattgaaaaaggggaata |
30304245 |
T |
|
| Q |
101 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
30304246 |
tggttgaagggaaccacttgaaaaagcctttcttgggagataacaattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcaactct |
30304345 |
T |
|
| Q |
201 |
atgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatac |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| |
|
|
| T |
30304346 |
ttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatat |
30304445 |
T |
|
| Q |
301 |
ttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattg |
400 |
Q |
| |
|
|| || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
30304446 |
ttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattg |
30304545 |
T |
|
| Q |
401 |
actcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
498 |
Q |
| |
|
| ||| |||||||||| | ||||||||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
30304546 |
attcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata |
30304643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 30048547 - 30048723
Alignment:
| Q |
165 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg |
264 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30048547 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttg |
30048646 |
T |
|
| Q |
265 |
aatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
341 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
30048647 |
aatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30048723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 30062888 - 30063064
Alignment:
| Q |
165 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg |
264 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30062888 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttg |
30062987 |
T |
|
| Q |
265 |
aatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
341 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
30062988 |
aatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30063064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 165 - 347
Target Start/End: Original strand, 30032301 - 30032483
Alignment:
| Q |
165 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg |
264 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30032301 |
aggaaaagataaaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttg |
30032400 |
T |
|
| Q |
265 |
aatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttc |
347 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||| ||||||| ||| ||||||||||| ||||| |||| |||||| ||||| |
|
|
| T |
30032401 |
aatattatggtgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttctttc |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 30228686 - 30228850
Alignment:
| Q |
165 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg |
264 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30228686 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttg |
30228785 |
T |
|
| Q |
265 |
aatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
329 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
30228786 |
aatattatggtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
30228850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 165 - 334
Target Start/End: Complemental strand, 30220378 - 30220209
Alignment:
| Q |
165 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg |
264 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30220378 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttg |
30220279 |
T |
|
| Q |
265 |
aatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctt |
334 |
Q |
| |
|
||||| | || |||||||||||||||||| || || | ||| ||||||||||||||||| |||| |
|
|
| T |
30220278 |
aatatcaaagttcctttagcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatctt |
30220209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 2311488 - 2311381
Alignment:
| Q |
165 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg |
264 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
2311488 |
aggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttg |
2311389 |
T |
|
| Q |
265 |
aatattat |
272 |
Q |
| |
|
|||||||| |
|
|
| T |
2311388 |
aatattat |
2311381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 29483193 - 29483293
Alignment:
| Q |
166 |
ggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttga |
265 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||| ||||| | ||||||| ||||||||||| ||| ||||| |||| |||||| |||| ||||| |
|
|
| T |
29483193 |
ggaaaggacaaacggagagaaggatcatcagctctttgaaggctcgaaagaatgacacccatgagattgtagccatctccaattgcatggtgaaatttga |
29483292 |
T |
|
| Q |
266 |
a |
266 |
Q |
| |
|
| |
|
|
| T |
29483293 |
a |
29483293 |
T |
|
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Target: scaffold0024 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 79534 - 79679
Alignment:
| Q |
178 |
ggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgt |
277 |
Q |
| |
|
||||||||||| | ||||||||| | | ||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || ||| |
|
|
| T |
79534 |
ggaagagaagggttatcagctctttctaaacatgaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtac |
79633 |
T |
|
| Q |
278 |
aagcagcattgcttgttggatacttgataacatgtatttcccaaag |
323 |
Q |
| |
|
||| ||||| |||||||||| || |||| |||||| |||||||| |
|
|
| T |
79634 |
cagctgcattttttgttggatatttaataatatgtatctcccaaag |
79679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 72506 - 72612
Alignment:
| Q |
214 |
agaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgta |
313 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| ||| | |
|
|
| T |
72506 |
agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgaa |
72605 |
T |
|
| Q |
314 |
tttccca |
320 |
Q |
| |
|
||||||| |
|
|
| T |
72606 |
tttccca |
72612 |
T |
|
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