View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12307_low_2 (Length: 569)
Name: NF12307_low_2
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12307_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 50373046 - 50373323
Alignment:
| Q |
7 |
agcagaacctgtggggtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaacgtgagaatgatgagagccacaatccaatttgcagaa |
106 |
Q |
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| T |
50373046 |
agcagaacccctggggtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaacgttagaatgatgagagccacaatccaatttgcagaa |
50373145 |
T |
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| Q |
107 |
tgatgagagaaaacagcttaactgcacactaattctactttttacggtcatctatacattttagaaagttagtggaagctaaacacttcaatccaaccta |
206 |
Q |
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| T |
50373146 |
tgatgagagaaaacagcttaactgcacactaattctactttttacggtcatctatacattttagaaagttagtggaagctaaacacttcaatccaaccta |
50373245 |
T |
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| Q |
207 |
atactatgtgtgcttgctaactagcgcctaatagatagtttaatagaaaatccagtcgtacacattcatcgttaacca |
284 |
Q |
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| T |
50373246 |
atactatgtgtgcttgccaactagcgcctaatagatagtttaatagaaaatccagtcgtacacattcatcgttaacca |
50373323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 308 - 562
Target Start/End: Original strand, 50373339 - 50373585
Alignment:
| Q |
308 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
407 |
Q |
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| T |
50373339 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
50373438 |
T |
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| Q |
408 |
actatatcccaaagctgcttaagcatgtgcatgtgcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
507 |
Q |
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| T |
50373439 |
actatatcccaaagctgcttaa------------gcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
50373526 |
T |
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| Q |
508 |
aaacctattcccaacaccactcact----gtcactggtttacggctacacaggttctgc |
562 |
Q |
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| T |
50373527 |
aaacctattcccaacaccactcactgtcagtcactggtttacggctacacagggtctgc |
50373585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 48272567 - 48272529
Alignment:
| Q |
153 |
gtcatctatacattttagaaagttagtggaagctaaaca |
191 |
Q |
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| T |
48272567 |
gtcatctatacattttagaaagttagtgcaagctaaaca |
48272529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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