View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12307_low_4 (Length: 453)

Name: NF12307_low_4
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12307_low_4
NF12307_low_4
[»] chr2 (18 HSPs)
chr2 (79-435)||(42846749-42847103)
chr2 (276-435)||(43377242-43377402)
chr2 (270-435)||(1779100-1779268)
chr2 (273-435)||(8381347-8381512)
chr2 (273-435)||(28585714-28585879)
chr2 (273-435)||(2110324-2110489)
chr2 (273-435)||(43370778-43370943)
chr2 (270-427)||(9370486-9370646)
chr2 (273-411)||(31921652-31921791)
chr2 (273-435)||(4828120-4828285)
chr2 (273-435)||(29194092-29194257)
chr2 (270-394)||(16970301-16970426)
chr2 (273-435)||(45080451-45080614)
chr2 (273-367)||(39646335-39646431)
chr2 (348-435)||(39646435-39646522)
chr2 (270-366)||(25898757-25898853)
chr2 (273-335)||(30422599-30422661)
chr2 (273-330)||(27922609-27922666)
[»] chr4 (21 HSPs)
chr4 (270-435)||(28910186-28910352)
chr4 (270-435)||(3172048-3172215)
chr4 (270-435)||(46870711-46870877)
chr4 (270-435)||(21240430-21240598)
chr4 (270-435)||(32217965-32218133)
chr4 (273-435)||(39788097-39788262)
chr4 (273-435)||(40071480-40071645)
chr4 (273-435)||(47199590-47199755)
chr4 (273-435)||(54438188-54438353)
chr4 (273-435)||(20789777-20789941)
chr4 (273-435)||(925167-925332)
chr4 (273-435)||(17493857-17494022)
chr4 (273-435)||(37064784-37064949)
chr4 (270-430)||(41555571-41555727)
chr4 (271-435)||(52101152-52101319)
chr4 (273-435)||(53509673-53509838)
chr4 (273-411)||(28689696-28689832)
chr4 (277-435)||(34408692-34408853)
chr4 (273-435)||(33800814-33800978)
chr4 (273-362)||(51744550-51744639)
chr4 (270-358)||(10441517-10441603)
[»] chr1 (13 HSPs)
chr1 (270-435)||(40562464-40562630)
chr1 (269-435)||(9129428-9129598)
chr1 (273-435)||(39150928-39151093)
chr1 (277-435)||(38321749-38321910)
chr1 (325-435)||(38817878-38817988)
chr1 (273-435)||(46371031-46371190)
chr1 (273-435)||(46862660-46862825)
chr1 (273-435)||(50777101-50777266)
chr1 (273-435)||(28036731-28036897)
chr1 (270-413)||(1207480-1207626)
chr1 (273-435)||(32045937-32046102)
chr1 (273-435)||(8229167-8229333)
chr1 (273-435)||(1929248-1929412)
[»] chr8 (11 HSPs)
chr8 (270-435)||(9753874-9754041)
chr8 (273-435)||(13243578-13243742)
chr8 (273-435)||(12738397-12738562)
chr8 (273-435)||(17493630-17493795)
chr8 (273-435)||(27820877-27821042)
chr8 (273-435)||(38069926-38070091)
chr8 (270-411)||(11147779-11147921)
chr8 (273-435)||(17336002-17336166)
chr8 (273-435)||(18575132-18575297)
chr8 (273-435)||(11254604-11254769)
chr8 (273-435)||(39907014-39907177)
[»] chr6 (12 HSPs)
chr6 (270-435)||(1870638-1870803)
chr6 (262-435)||(7271098-7271274)
chr6 (269-435)||(13210448-13210614)
chr6 (279-435)||(30736523-30736682)
chr6 (273-435)||(29182695-29182860)
chr6 (278-435)||(1241213-1241372)
chr6 (273-435)||(28541618-28541783)
chr6 (270-404)||(31833619-31833751)
chr6 (273-431)||(12350380-12350541)
chr6 (279-435)||(13042076-13042233)
chr6 (273-435)||(16435883-16436044)
chr6 (273-435)||(31013526-31013691)
[»] chr5 (7 HSPs)
chr5 (270-435)||(2970694-2970860)
chr5 (273-435)||(42897405-42897570)
chr5 (273-435)||(36982290-36982455)
chr5 (273-411)||(36767907-36768046)
chr5 (270-411)||(33404359-33404501)
chr5 (273-435)||(14044160-14044324)
chr5 (270-358)||(5712600-5712688)
[»] chr7 (14 HSPs)
chr7 (270-435)||(21442828-21442994)
chr7 (304-435)||(48838164-48838296)
chr7 (276-435)||(6392375-6392537)
chr7 (273-435)||(4041051-4041216)
chr7 (273-435)||(40232146-40232311)
chr7 (273-435)||(29737509-29737674)
chr7 (304-435)||(38276607-38276741)
chr7 (273-435)||(41427679-41427844)
chr7 (270-411)||(22338098-22338240)
chr7 (270-411)||(22619880-22620022)
chr7 (273-435)||(27596117-27596281)
chr7 (285-415)||(25943690-25943823)
chr7 (276-431)||(31689387-31689545)
chr7 (273-435)||(24300185-24300340)
[»] scaffold0061 (1 HSPs)
scaffold0061 (273-435)||(10048-10213)
[»] chr3 (10 HSPs)
chr3 (273-435)||(40496877-40497042)
chr3 (270-435)||(48737630-48737798)
chr3 (273-435)||(51545766-51545931)
chr3 (273-435)||(24709114-24709279)
chr3 (273-435)||(48169828-48169993)
chr3 (273-435)||(50676579-50676742)
chr3 (273-435)||(54014341-54014506)
chr3 (270-411)||(30462798-30462940)
chr3 (273-435)||(41346151-41346316)
chr3 (273-394)||(13542823-13542947)
[»] scaffold1194 (1 HSPs)
scaffold1194 (270-435)||(1083-1239)
[»] scaffold0047 (1 HSPs)
scaffold0047 (273-435)||(69857-70022)
[»] scaffold0519 (1 HSPs)
scaffold0519 (273-435)||(10624-10789)
[»] scaffold0016 (1 HSPs)
scaffold0016 (274-415)||(92201-92345)
[»] scaffold0532 (1 HSPs)
scaffold0532 (273-435)||(3918-4083)
[»] scaffold0318 (2 HSPs)
scaffold0318 (368-435)||(16461-16528)
scaffold0318 (273-321)||(16565-16613)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 79 - 435
Target Start/End: Original strand, 42846749 - 42847103
Alignment:
Q  79 ttgcctggcattctcttatccagttaggtatttctatagcaaacggtgctgttttataggaaattttgaactctattcctcacaa---tacgatgtggga 175  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||    
T  42846749 ttgcctggcattctcttatccagttaggtatttctacagcaaacggtgctgttttataggaaattttgaactctattcctcacaactctacaatgtggga 42846848  T
Q  176 cttaatgtttgaaagcttaaaactgaattagagcattatgctgtctgtcaagtgatttttattctattctattactccctccct-catccctcaatactt 274  Q
    ||  |||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| | ||||    
T  42846849 ct--atgtttgaa---ttaaaaatgaattagagcattatgctgtctgtcaagtgatttttattctattctattattccctccctccgtccctcgagactt 42846943  T
Q  275 gaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-ttttaa 373  Q
    ||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  42846944 gaccatttcacacagattatgaaaggtgcaaaaatgaaag--agagaatgatatttttactaaattgtccttgttattattttgaaatcttcacttttaa 42847041  T
Q  374 gtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42847042 gtaatgattattttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 42847103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 435
Target Start/End: Original strand, 43377242 - 43377402
Alignment:
Q  276 accatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-ttttaag 374  Q
    ||||||||| ||| |||| ||||  || |||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  43377242 accatttcaaacaaattaagaaaagtgtaaagatgaaagaaagaaaatgatacttttactgaattgtacttgttattattttgaaaccttcacttttaag 43377341  T
Q  375 taatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||  |||||||||||||||    
T  43377342 taatgattactttctttgttccactacaaacttttacttggagactacaaaaagtatttat 43377402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 1779100 - 1779268
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca 367  Q
    ||||||||||||||||| |||||| ||||  || |||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||||||   ||||    
T  1779100 tacttgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgtctttgtcattattttgaaactttttca 1779199  T
Q  368 -ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
     |||||||||||||||||||||||| ||||| |||||||||| |||||| || ||||||||||||||||    
T  1779200 cttttaagtaatgattactttctttattccactacaaactttaacatggggaccacaaaaagtatttat 1779268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 8381347 - 8381512
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||| ||| ||||| ||||||| | ||| |||||| |||||||||||||   |||| ||    
T  8381347 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaatagagtgatacttttactgagttgcccttgtcattattttgaaactttttcattt 8381446  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||| ||| ||||| ||| ||||||||||||||||    
T  8381447 ttaagtaatgattactttctttgttccactacaaattttaacatgaagaccacaaaaagtatttat 8381512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 28585714 - 28585879
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  28585714 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 28585813  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  28585814 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 28585879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 2110489 - 2110324
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| |||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  2110489 ttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 2110390  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||| || ||||||||||||||||    
T  2110389 ttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttat 2110324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 43370943 - 43370778
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || ||| || ||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  43370943 ttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 43370844  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  43370843 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 43370778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 270 - 427
Target Start/End: Complemental strand, 9370646 - 9370486
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca 367  Q
    |||||||||||||||||||||||| ||||  || |||||||||| ||||| |||||| |||||||| |||||||||||| |||||||||||||   ||||    
T  9370646 tacttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaagaaaatgatttttttactgaattgtccttgtcattattttgaaactttttca 9370547  T
Q  368 -ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaa 427  Q
     ||||||||||||||||||||||||||| || |||||||||| | |||| || ||||||||    
T  9370546 cttttaagtaatgattactttctttgtttcactacaaactttaatatggggatcacaaaaa 9370486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 273 - 411
Target Start/End: Original strand, 31921652 - 31921791
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-tttt 371  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  31921652 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactaaattgcccttattattatttttaaaccttcactttt 31921751  T
Q  372 aagtaatgattactttctttgttccattacaaacttttac 411  Q
    || |||| ||||||||  |||||||| ||||| |||||||    
T  31921752 aaataataattactttaattgttccactacaagcttttac 31921791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 4828120 - 4828285
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||| ||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  4828120 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaaaagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 4828219  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| || ||||||| |||||| || ||||||||||||||||    
T  4828220 ttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttat 4828285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 29194257 - 29194092
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    |||||||||||||||| |||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| |||||||||||||   |||| ||    
T  29194257 ttgaccatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 29194158  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||| | || ||||||||||||||||    
T  29194157 ttaagtaatgattattttctttgttccactacaaactttaacatcgggaccacaaaaagtatttat 29194092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 394
Target Start/End: Complemental strand, 16970426 - 16970301
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    |||||| |||||||||||| |||| ||||  || |||||| ||||||||| ||||||||||||||| ||||| |||| |||||||||| ||||||||| |    
T  16970426 tacttggccatttcacacatattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttattattatttttaaaccttcact 16970327  T
Q  369 tttaagtaatgattactttctttgtt 394  Q
    ||||||||||||||||||||||||||    
T  16970326 tttaagtaatgattactttctttgtt 16970301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 45080451 - 45080614
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||  ||||| ||||||| | ||| |||| | ||||| ||||||| ||  || ||    
T  45080451 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagag--tgatacttttactgagttgcccttatcattatgttgaaactttttcactt 45080548  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  45080549 ttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 45080614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 39646335 - 39646431
Alignment:
Q  273 ttgaccatttcacacagattatgaaaga--tgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca 367  Q
    |||||||||||| |||||||| |||| |  || ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  39646335 ttgaccatttcatacagattaagaaaaaaatgtaaaaatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaaccttca 39646431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 39646435 - 39646522
Alignment:
Q  348 ttattattttgaaaccttca-ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||  || ||||||||||||||||    
T  39646435 ttattattttgaaaccttcacttttaagtaatgattacttt-tttgttccactacaaacttttacatgaggaccacaaaaagtatttat 39646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 25898853 - 25898757
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttc 366  Q
    |||||||||||||||||||||||| |||   || |||||||||||||| | | ||||||||||||| ||||| |||| |||||||||| ||| ||||    
T  25898853 tacttgaccatttcacacagattaagaagagtgtaaagatgaaagaaaaaaagtgatatttttactgaattgcccttattattatttttaaatcttc 25898757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 30422661 - 30422599
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttact 335  Q
    ||||||||||||||||||||| ||||  || || ||||||||||||||| ||||| |||||||    
T  30422661 ttgaccatttcacacagattaagaaaagtgtaacgatgaaagaaagagagtgatacttttact 30422599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 27922609 - 27922666
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatattt 330  Q
    |||| ||||||||||| |||| ||||  || |||||||||||||||||||||||||||    
T  27922609 ttgatcatttcacacatattaagaaaagtgtaaagatgaaagaaagagaatgatattt 27922666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 28910186 - 28910352
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    |||||||  |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  28910186 tacttgattatttcacatagattaagaaaaatgcaaagatgaaagaaagagaatgatatttttactgaattgtccttgttattattttgaaaccttcact 28910285  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||    
T  28910286 tttaagtaatgattactttctttgttccactagaaacttttacatggaaaccacaaaaagtatttat 28910352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 3172048 - 3172215
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgtt-attattttgaaaccttca- 367  Q
    |||||||||||||||||||||||| |||| ||| |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||     
T  3172048 tacttgaccatttcacacagattaagaaaaatgtaaagatgaaaaaaagataatgatatttttactgaattgtccttgttaattattttgaaaccttcac 3172147  T
Q  368 ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  3172148 ttttaagtaatgattactttctttgttccactacaaacttttacattgagaccacaaaaagtatttat 3172215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 46870877 - 46870711
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    |||||||| |||||||||| | ||  |||  ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |    
T  46870877 tacttgacaatttcacacatagtaaaaaaagtgcaaggatgaaagaaagagaatgatatttttactgaatagtccttgttattattttgaaaccttcact 46870778  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  46870777 tttaagtaatgatgactttctttgttccactacaaacttttacatggggaccacaaaaagtatttat 46870711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 21240598 - 21240430
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca 367  Q
    |||||||||||||||||||||||| ||||  || | |||||||||||||||||||||||||||||| ||||| | |||| | |||||||||||   ||||    
T  21240598 tacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagagaatgatatttttactgaattgacattgtcactattttgaaactttttca 21240499  T
Q  368 -ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
     |||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  21240498 tttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 21240430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 32217965 - 32218133
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca 367  Q
    |||||||||||||||||||||||| |||   || |||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||||   ||||    
T  32217965 tacttgaccatttcacacagattaagaagagtgtaaagatgaaagaaagagaattatatttttactgaatagtccttgtcattattttgaaactttttca 32218064  T
Q  368 -ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
     |||||||||||||||||||||||||||||| |||||||||| ||||||  | ||||||||||||||||    
T  32218065 cttttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttat 32218133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 39788262 - 39788097
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  39788262 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 39788163  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  39788162 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 39788097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 40071480 - 40071645
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| |||||||||||||   |||| ||    
T  40071480 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 40071579  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  40071580 ttaagcaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 40071645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 47199755 - 47199590
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||||||||| | | ||| |||||| |||||||| |||| ||  || ||    
T  47199755 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgagttgcccttgtcattattttaaaactttttcactt 47199656  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  47199655 ttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 47199590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 54438188 - 54438353
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||| ||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| |||||||| |||| ||  || ||    
T  54438188 ttgaccatttcacaccgattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttaaaactttttcactt 54438287  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  54438288 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 54438353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 20789941 - 20789777
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| |  || |||||| ||||||||||||| ||  || ||    
T  20789941 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagctg-ccttgtcattattttgaaactttttcactt 20789843  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  20789842 ttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 20789777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 925167 - 925332
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| |||||||||||||||| ||||  || |||||| ||||||| | | ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  925167 ttgatcatttcacacagattaagaaaagtgtaaagataaaagaaataaagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 925266  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  925267 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 925332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 17494022 - 17493857
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||| | | ||| |||||| |||||||||||||   |||| ||    
T  17494022 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttattgagttgcccttgtcattattttgaaactttttcactt 17493923  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||| |||| ||||||||||||| |||||||||| |||||| || |||||||||| |||||    
T  17493922 ttaagtaataattattttctttgttccactacaaactttaacatggggaccacaaaaagtttttat 17493857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 37064784 - 37064949
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| ||||||||| |||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||| ||||||||| ||  || ||    
T  37064784 ttgatcatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcatttttttgaaactttttcactt 37064883  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||  || ||||||||||||||||    
T  37064884 ttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttat 37064949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 270 - 430
Target Start/End: Complemental strand, 41555727 - 41555571
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-- 367  Q
    |||||| ||||||||||||||||| ||||  || ||||||||||||    |||||||||||||||| ||||||| ||   |||||||| |||||||||      
T  41555727 tacttggccatttcacacagattaagaaaagtgtaaagatgaaaga----gaatgatatttttactgaattgtcatt---attatttttaaaccttcact 41555635  T
Q  368 -ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagta 430  Q
     ||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||||||||    
T  41555634 tttttaagtaatgattactttctttgtttcactacaaacttttacatagagaccacaaaaagta 41555571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 271 - 435
Target Start/End: Complemental strand, 52101319 - 52101152
Alignment:
Q  271 acttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaa--ccttca- 367  Q
    ||||||| ||||||||||||||| ||||  || |||||||||||||| | ||||||||||||||| |||||  ||||| ||||||||||||    ||||     
T  52101319 acttgactatttcacacagattaagaaaagtgtaaagatgaaagaaatataatgatatttttactgaattgcacttgtcattattttgaaattttttcac 52101220  T
Q  368 ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||| ||| ||||||||||||| |||||||||| ||||||  | ||||||||||||||||    
T  52101219 ttttaagtaatggttattttctttgttccactacaaactttaacatgggaaccacaaaaagtatttat 52101152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 53509673 - 53509838
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||| |||| ||||  |||||||||  || |||||||||||||| ||||||||||| ||||| ||||||| |||| |||||||||||||   |||| ||    
T  53509673 ttgacaattttacacttattatgaaaagtgtaaagatgaaagaaaaagaatgatattgttactgaattgtcattgtcattattttgaaactttttcactt 53509772  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||| ||||||||| ||||||||||||| |||||| ||| |||||| || ||||||||||||||||    
T  53509773 ttaaataatgattattttctttgttccactacaaattttaacatggggatcacaaaaagtatttat 53509838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 411
Target Start/End: Original strand, 28689696 - 28689832
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttcatttta 372  Q
    ||||| ||||||||||||||| |||| ||| ||||||||| |||| | || |||||||||||| ||||| |||| |||||||||| ||||||||||||||    
T  28689696 ttgactatttcacacagattaagaaaaatgtaaagatgaa-gaaaaaaaa-gatatttttactgaattgcccttattattatttttaaaccttcatttta 28689793  T
Q  373 agtaatgattactttctttgttccattacaaacttttac 411  Q
    | |||| ||||||||  |||||||| |||||||||||||    
T  28689794 aataataattactttaattgttccactacaaacttttac 28689832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 277 - 435
Target Start/End: Original strand, 34408692 - 34408853
Alignment:
Q  277 ccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-ttttaa 373  Q
    |||||||||||| |||| ||||  || |||||||||||||||||||||||| ||||| | | ||| |||||| |||||||||||||   |||| ||||||    
T  34408692 ccatttcacacatattaggaaaagtgtaaagatgaaagaaagagaatgatacttttattgagttgcccttgtcattattttgaaactttttcacttttaa 34408791  T
Q  374 gtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||| ||||||||||  | |||||||||| |||||  || ||||||||||||||||    
T  34408792 gtaatgattattttctttgttatactacaaactttaacatgtggaccacaaaaagtatttat 34408853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 33800814 - 33800978
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||  ||||  || ||||||| |||||||||| ||||| ||||||| | ||| |||||| || ||||||||||   |||| ||    
T  33800814 ttgaccatttcacacagattcagaaaagtgtaaagatggaagaaagagagtgatacttttactgagttgcccttgtcatcattttgaaactttttcactt 33800913  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||| ||||||||||||||||||||||| |||||||||| | |||| || ||| ||||||||||||    
T  33800914 ttaaataatgattactttctttgttccactacaaactttaatatggggaccac-aaaagtatttat 33800978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 51744550 - 51744639
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac 362  Q
    ||||||||||||||||||||| ||||  || |||||||  ||||||||| ||||| ||||||||| ||| |||||| |||||||||||||    
T  51744550 ttgaccatttcacacagattaagaaaagtgtaaagatgtgagaaagagagtgatacttttactaagttgcccttgtcattattttgaaac 51744639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 358
Target Start/End: Complemental strand, 10441603 - 10441517
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttg 358  Q
    |||||||||||||||||||||||| || |  || |||||| ||||||||||  ||||||||||||| ||||| |||| |||||||||||    
T  10441603 tacttgaccatttcacacagattaagataagtgtaaagataaaagaaagag--tgatatttttactgaattgcccttattattattttg 10441517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 40562464 - 40562630
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    |||||||||||||||||||||||| ||||  || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || | |    
T  40562464 tacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaacttttact 40562563  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||    
T  40562564 tttaagtaatgattactttctttgttctactacaaacttttacatggagaccacaaagagtatttat 40562630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 269 - 435
Target Start/End: Original strand, 9129428 - 9129598
Alignment:
Q  269 atacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgata---tttttactaaattgtccttgttattattttgaaacctt 365  Q
    ||||||||| |||||||| ||||||  |||  || |||||| |||||||||||||||||   |||||||| ||||||||||||||||||||| |||| ||    
T  9129428 atacttgactatttcacaaagattaacaaaagtgtaaagataaaagaaagagaatgataatatttttactcaattgtccttgttattatttttaaacttt 9129527  T
Q  366 ca-ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    || |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||    
T  9129528 cacttttaagtaatgattactttctttgttccactacaaaattttacatggagaccacaaaaaatatttat 9129598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 39150928 - 39151093
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| |||| ||| |||||| ||||||||||||||||| ||||||| | ||| |||||| |||||||||||||   |||| ||    
T  39150928 ttgaccatttcacacagattaagaaaaatgtaaagataaaagaaagagaatgatacttttactgagttgcccttgtcattattttgaaactttttcactt 39151027  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||  || ||||||||||||||||    
T  39151028 ttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttat 39151093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 277 - 435
Target Start/End: Complemental strand, 38321910 - 38321749
Alignment:
Q  277 ccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-ttttaa 373  Q
    ||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||||||    
T  38321910 ccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 38321811  T
Q  374 gtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  38321810 gtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 38321749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 325 - 435
Target Start/End: Complemental strand, 38817988 - 38817878
Alignment:
Q  325 atatttttactaaattgtccttgttattattttgaaaccttcattttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaa 424  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| || |||||    
T  38817988 atatttttattgaattgtccttgttattattttgaaaccttcattttaagtaattattactttctttgtttcactacaaacttttacatggggaccacaa 38817889  T
Q  425 aaagtatttat 435  Q
    |||||||||||    
T  38817888 aaagtatttat 38817878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 46371190 - 46371031
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttcatttta 372  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| ||||| |||||| ||||||||||||| ||  ||  |    
T  46371190 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgaattgcccttgtcattattttgaaacttt--ttcaa 46371093  T
Q  373 agtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||| |||||||||| | |||| || ||||||||||||||||    
T  46371092 agtaatgattactttctttgttccactacaaactttaatatgg-gaccacaaaaagtatttat 46371031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 46862825 - 46862660
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||| |||| || | ||| |||||| ||||||||||||| ||  || ||    
T  46862825 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttcctgagttgcccttgtcattattttgaaactttttcactt 46862726  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  46862725 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 46862660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 50777266 - 50777101
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  50777266 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 50777167  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || | ||||||||||||||    
T  50777166 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccccaaaaagtatttat 50777101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 28036731 - 28036897
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatattttt-actaaattgtccttgttattattttgaaacctt--ca-t 368  Q
    |||||||||||||||| |||| ||||  || |||||| ||||||||||| |||||||||| ||| | ||| |||||| ||||||||||||| ||  || |    
T  28036731 ttgaccatttcacacaaattaagaaaagtgtaaagataaaagaaagagagtgatattttttactgagttgcccttgtcattattttgaaactttttcact 28036830  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  28036831 tttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 28036897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 413
Target Start/End: Original strand, 1207480 - 1207626
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca 367  Q
    |||||||||||||||||||||||| ||||  || | |||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||   ||||    
T  1207480 tacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagataatgatatttttactgaattgcccttgtcattattttgaaactttttca 1207579  T
Q  368 -ttttaagtaatgattactttctttgttccattacaaacttttacat 413  Q
     ||||||||||||||||||||| |||||||  |||||||||| ||||    
T  1207580 cttttaagtaatgattactttccttgttcctctacaaactttaacat 1207626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 32046102 - 32045937
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || ||| |||||||||||| | ||||| ||||||  | ||| ||||||  |||||||||||| ||  || ||    
T  32046102 ttgaccatttcacacagattaagaaaagtgtaaaaatgaaagaaagaaagtgatacttttaccgagttgcccttgtcgttattttgaaactttttcactt 32046003  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  32046002 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 32045937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 8229333 - 8229167
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaaga-gaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-t 368  Q
    ||||||||||||||||||||| ||||  || |||||||||| ||| | || ||||||||||||| | ||| |||||| |||||||| |||| ||  || |    
T  8229333 ttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaaaaagagtgatatttttactgagttgcccttgtcattattttaaaactttttcact 8229234  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||| || || |||||||||| |||||| || ||||||||||||||||    
T  8229233 tttaagtaatgattactttctttatttcactacaaactttaacatggggaccacaaaaagtatttat 8229167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 1929248 - 1929412
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    |||| |||||||||||||||| ||||  || |||||||||||||| ||| ||||| ||||||| | ||| |||||| |||||||||||||   |||| ||    
T  1929248 ttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 1929347  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||  ||| ||||||||| |||||||||| |||||| || |||||||| |||||||    
T  1929348 ttaagtaatgatt-ttttttttgttccactacaaactttaacatggggaccacaaaaaatatttat 1929412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 9754041 - 9753874
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgtt-attattttgaaaccttca- 367  Q
    |||||||||||||||||||||||| ||||  || |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||     
T  9754041 tacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgtccttgttaattattttgaaaccttcac 9753942  T
Q  368 ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||||| |||||||    
T  9753941 ttttaagtaatgattactttctttgtttcactacaaacttttacattgagaccacaaaaaatatttat 9753874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 13243578 - 13243742
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgtta-ttattttgaaaccttcatttt 371  Q
    ||||||||||||||| ||||| ||||  || |||||| ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  13243578 ttgaccatttcacaccgattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgtccttgttaattattttgaaaccttcatttt 13243677  T
Q  372 -aagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
     |||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  13243678 taagtaatgattattttctttgttccactacaaacttttacattgagaccacaaaaagtatttat 13243742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 12738397 - 12738562
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||| ||||||||||||||| ||||| |||||| |||||||||||||   |||| ||    
T  12738397 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 12738496  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || |||||||| |||||||    
T  12738497 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaaatatttat 12738562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 17493795 - 17493630
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    |||| |||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||||| ||| |||||| |||||||||||||   |||| ||    
T  17493795 ttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttgcccttgtcattattttgaaactttttcattt 17493696  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||| || ||||||||||||||||    
T  17493695 ttaagtaatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttat 17493630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 27821042 - 27820877
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  27821042 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 27820943  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||| || ||||||||||||||||    
T  27820942 ttaagtaatgattactttctttgttccactacaaattttaacatggggaccacaaaaagtatttat 27820877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 38069926 - 38070091
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--cattt 370  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||| | ||||| ||||||| | ||| |||||| ||||||||||||| ||  |||||    
T  38069926 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagatagtgatacttttactgagttgcccttgtcattattttgaaactttttcattt 38070025  T
Q  371 t-aagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    | |||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  38070026 ttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 38070091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 11147921 - 11147779
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    ||||||| |||||||||||||||| ||||  || ||||||||||| |||||||||||||||||||| ||||| |||| |||||||||| ||||||||| |    
T  11147921 tacttgatcatttcacacagattaagaaaagtgtaaagatgaaaggaagagaatgatatttttactgaattgcccttattattatttttaaaccttcact 11147822  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttac 411  Q
    ||||| |||| ||||||||  |||||||| |||||||||||||    
T  11147821 tttaaataataattactttaattgttccactacaaacttttac 11147779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 17336002 - 17336166
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||| |||||||| | |||| |||| ||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||   |||| ||    
T  17336002 ttgacaatttcacataaattaagaaa-atgtaaagatgaaagaaagagaatgatatttttactgaactgtccttgtcattattttgaaactttttcactt 17336100  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||| |||||||| || ||||||| ||||||  | ||||||||||||||||    
T  17336101 ttaagtaatgattactttcgttgttccactagaaactttaacatgggaaccacaaaaagtatttat 17336166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 18575297 - 18575132
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| ||||||||||| |||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  18575297 ttgatcatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 18575198  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  18575197 ttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 18575132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 11254769 - 11254604
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||| |||| | |||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  11254769 ttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 11254670  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  11254669 ttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 11254604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 39907177 - 39907014
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||||||||| |||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||| | ||||||||||||  ||  || ||    
T  39907177 ttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttatcattattttgaaattttttcactt 39907078  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||  || ||||||||||||||||    
T  39907077 ttaagtaatgattactttctttgttccactacaaactttaacatg--gaccacaaaaagtatttat 39907014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 1870803 - 1870638
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    |||||||| |||| ||||||||||  |||| |  ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |    
T  1870803 tacttgacaattttacacagattagaaaag-tataaagatgaaagaaagggaatgatatttttactaaattgcccttgttattattttgaagccttcact 1870705  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1870704 tttaagtaatgattactttctttgttccactacaaacttttacatggagatcacaaaaagtatttat 1870638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 262 - 435
Target Start/End: Original strand, 7271098 - 7271274
Alignment:
Q  262 tccctcaatacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaa 361  Q
    |||||||||||||||| ||||||||||||||| ||||  || |||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||    
T  7271098 tccctcaatacttgacaatttcacacagattaagaaaagtgtaaagatgaaagaaatagaatgatatttttactgaattgcccttgtcattattttgaaa 7271197  T
Q  362 c--cttca-ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |   |||| |||||||||||||||||||||||| ||||| |||||||||| |||||| ||  |||||||||||||||    
T  7271198 ctttttcacttttaagtaatgattactttctttattccactacaaactttaacatggggacaacaaaaagtatttat 7271274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 269 - 435
Target Start/End: Complemental strand, 13210614 - 13210448
Alignment:
Q  269 atacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca- 367  Q
    ||||||||||||||||||||||||| ||||  || |||||||||||||||||||||||  ||||||| ||| | ||||||||| |||||||||| ||||     
T  13210614 atacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgattattttactgaatcgcccttgttat-attttgaaactttcac 13210516  T
Q  368 ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||    
T  13210515 ttttaagtaagaattactttctttgttccactacaaacttttacatggagaccacaaaaaatatttat 13210448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 279 - 435
Target Start/End: Complemental strand, 30736682 - 30736523
Alignment:
Q  279 atttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-ttttaagt 375  Q
    ||||||||||||||| ||||  || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||   |||| ||||||||    
T  30736682 atttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattgtccttgtcattattttgaaactttttcacttttaagt 30736583  T
Q  376 aatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||  |||||||||| |||||| ||  |||||||||||||||    
T  30736582 aatgattactttctttgttcctctacaaactttaacatggggattacaaaaagtatttat 30736523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 29182860 - 29182695
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||||||| | ||| |||||| |||||||||||||   |||| ||    
T  29182860 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtcattattttgaaactttttcactt 29182761  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||| | || ||||||| ||||||||    
T  29182760 ttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaatgtatttat 29182695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 435
Target Start/End: Complemental strand, 1241372 - 1241213
Alignment:
Q  278 catttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--cattttaagt 375  Q
    ||||||||||| |||| |||| ||| ||| |||||||||||| | ||||| ||||||| | ||| |||||| ||||||||||||| ||  ||||||||||    
T  1241372 catttcacacaaattaagaaaaatgtaaaaatgaaagaaagaaagtgatacttttactgagttgcccttgtcattattttgaaactttttcattttaagt 1241273  T
Q  376 aatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||| | |||||||| | |||| || ||||||||||||||||    
T  1241272 aatgattactttctttgttccactgcaaactttaatatggggaccacaaaaagtatttat 1241213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 28541618 - 28541783
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||||||||| |||||||||| ||||  || |||||||||||||||||| ||||| |||||||   ||| |||||| ||||||||||||| ||  || ||    
T  28541618 ttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttgcccttgtcattattttgaaactttttcactt 28541717  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||| ||||||||| |||||||||| |||||| || ||||||||||||||||    
T  28541718 ttaagtaatgattattttttttgttccactacaaactttaacatggggaccacaaaaagtatttat 28541783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 404
Target Start/End: Original strand, 31833619 - 31833751
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    ||||||||||||| ||||| |||| ||||  || |||||||||||||| | ||||||||||||||||||||| ||   |||||||||||||||||||| |    
T  31833619 tacttgaccattttacacaaattaagaaaagtgtaaagatgaaagaaaaataatgatatttttactaaattgccc---ttattattttgaaaccttcatt 31833715  T
Q  369 tttaagtaatgattactttctttgttccattacaaa 404  Q
    ||||||||||||||| ||||||||||||| ||||||    
T  31833716 tttaagtaatgattattttctttgttccactacaaa 31833751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 431
Target Start/End: Complemental strand, 12350541 - 12350380
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||  ||||||| | ||| |||||| |||||||||||||   |||| ||    
T  12350541 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatgcttttactgagttgcccttgtcattattttgaaactttttcactt 12350442  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtat 431  Q
    |||||||||||||||||||||||||  | |||||||||| |||||  || ||||||||||||    
T  12350441 ttaagtaatgattactttctttgttttactacaaactttaacatgaggaccacaaaaagtat 12350380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 435
Target Start/End: Complemental strand, 13042233 - 13042076
Alignment:
Q  279 atttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt-ca-ttttaagta 376  Q
    |||||||||||||||  |||| || |||||||||||||||||| ||||||||||||| | ||| |||||| |||||||  |||  || || |||||||||    
T  13042233 atttcacacagattaaaaaag-tgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtcattatttaaaaaattttcacttttaagta 13042135  T
Q  377 atgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||| ||||||||||||| |||||||||| |||| | || ||||||||||||||||    
T  13042134 atgattattttctttgttccactacaaactttaacatagggaccacaaaaagtatttat 13042076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 16436044 - 16435883
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| |||||||||||||||| ||||  || |||||||||||||||    ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  16436044 ttgagcatttcacacagattaagaaaagtgtaaagatgaaagaaag----tgatacttttactgagttgcccttgtcattattttgaaactttttcactt 16435949  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaac-acaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||    
T  16435948 ttaagtaatgattactttctttgttccactacaaactttaacatg-agaaccacaaaaagtatttat 16435883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 31013526 - 31013691
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    |||||||||||| |||||||| ||||  || ||| | |||||||||| ||||||||||||||| ||||| |||| | |||||||||||||   |||| ||    
T  31013526 ttgaccatttcatacagattaagaaaagtgtaaaaacgaaagaaagataatgatatttttactgaattgcccttatcattattttgaaactttttcactt 31013625  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||| | |||||||||| | |||| |  |||||||| |||||||    
T  31013626 ttaagtaatgattattttctttgttctactacaaactttaatatgggggccacaaaaaatatttat 31013691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 2970694 - 2970860
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgtt-attattttgaaaccttca- 367  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||| ||| ||||| ||||||| ||||||||||||||||||     
T  2970694 tacttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagataatgatattttcactgaattgcccttgttaattattttgaaaccttcac 2970793  T
Q  368 ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||    
T  2970794 ttttaagtaatgattactttctttgttccactacaaac-tttacattgagaccacaaaaagtatttat 2970860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 42897405 - 42897570
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  42897405 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 42897504  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  42897505 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 42897570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 36982455 - 36982290
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||| ||| ||||| ||||||| | ||| |||||| |||||||||||||   |||| ||    
T  36982455 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 36982356  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||| ||||||||| |||||||||| |||||| || ||||||||||||||||    
T  36982355 ttaagtaatgattattttatttgttccactacaaactttaacatggggaccacaaaaagtatttat 36982290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 273 - 411
Target Start/End: Original strand, 36767907 - 36768046
Alignment:
Q  273 ttgaccatttcacacagattatgaaaga-tgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-ttt 370  Q
    ||||||| |||||||||||||  ||||| || |||||||||||||||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||    
T  36767907 ttgaccacttcacacagattaa-aaagagtgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatttttaaaccttcacttt 36768005  T
Q  371 taagtaatgattactttctttgttccattacaaacttttac 411  Q
    ||| ||||||||||||||||||||||| |||||| ||||||    
T  36768006 taaataatgattactttctttgttccactacaaatttttac 36768046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 33404501 - 33404359
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    ||||||| ||||| |||||||||| |||| ||| |||||||||||||||||| ||||||||||||| ||||| |||| |||||||||| ||||||| | |    
T  33404501 tacttgatcattttacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatttttaaacctttact 33404402  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttac 411  Q
    ||||| |||| ||||||||  |||||||| ||||||| |||||    
T  33404401 tttaaataataattactttaattgttccactacaaacatttac 33404359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 14044324 - 14044160
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| ||||||||||  |||| ||||  || |||||||||||||||||| ||||| ||| ||||| ||| |||||| ||||||||||||| ||  || ||    
T  14044324 ttgatcatttcacacgtattaagaaaagtgtaaagatgaaagaaagagagtgatacttt-actaagttgcccttgtcattattttgaaactttttcactt 14044226  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||| || ||||||||||||||||    
T  14044225 ttaaataatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttat 14044160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 358
Target Start/End: Complemental strand, 5712688 - 5712600
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttg 358  Q
    |||||||||||| ||||||||||| |||| ||| |||||||||||||||| | |||||||||| || ||||| |||| |||||||||||    
T  5712688 tacttgaccattccacacagattaagaaaaatgtaaagatgaaagaaagaaagtgatattttttctgaattgcccttattattattttg 5712600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 21442828 - 21442994
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    ||||| ||||||||| |||||||| ||||  || |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |    
T  21442828 tacttcaccatttcatacagattaagaaaagtgtaaagatgaaaaaaatagaatgatatttttactaaattgcccttgttattattttgaaactttcact 21442927  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||| ||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||    
T  21442928 tttaagtaatggttactttctttattccactgcaaacttttacatggagaccacaaaaagtatttat 21442994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 304 - 435
Target Start/End: Complemental strand, 48838296 - 48838164
Alignment:
Q  304 aaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-ttttaagtaatgattactttctttgttccattaca 402  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| ||||    
T  48838296 aaagataaaagaaagaaaatgatatttttactaaattgtccttgttattattttaaaactttcacttttaagtaatgattactttctttgttccactaca 48838197  T
Q  403 aacttttacatggagaacacaaaaagtatttat 435  Q
     ||||||||||||||| ||||||||||||||||    
T  48838196 cacttttacatggagaccacaaaaagtatttat 48838164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 276 - 435
Target Start/End: Complemental strand, 6392537 - 6392375
Alignment:
Q  276 accatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tttta 372  Q
    |||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||||| ||| |||||| |||||||||||||   |||| |||||    
T  6392537 accatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttgcccttgtcattattttgaaactttttcactttta 6392438  T
Q  373 agtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  6392437 agtaatgattaatttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 6392375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 4041216 - 4041051
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| ||||  || ||||||||||||||| || ||||| ||||||| | |||||||||| |||||||||||||   |||| ||    
T  4041216 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagggagtgatacttttactgagttgtccttgtcattattttgaaactttttcactt 4041117  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||| ||||||||||    
T  4041116 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaacaagtatttat 4041051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 40232146 - 40232311
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  40232146 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 40232245  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  40232246 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 40232311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 29737674 - 29737509
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || ||| || ||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  29737674 ttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 29737575  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  29737574 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 29737509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 304 - 435
Target Start/End: Original strand, 38276607 - 38276741
Alignment:
Q  304 aaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-ttttaagtaatgattactttctttgttccatta 400  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||| ||  || |||||||||||||||||||||||||||||| ||    
T  38276607 aaagatgaaagaaagagaatgatgtttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccacta 38276706  T
Q  401 caaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||| | |||  || ||||||||||||||||    
T  38276707 caaactttaatatgaggaccacaaaaagtatttat 38276741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 41427679 - 41427844
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| ||||||||||||||||  |||  || |||||||||||||||||| | ||| ||||| | ||||| |||||| ||||||||||||| ||  || ||    
T  41427679 ttgatcatttcacacagattaaaaaaagtgtaaagatgaaagaaagagagtaatacttttattgaattgcccttgtcattattttgaaactttttcactt 41427778  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||| || |||||||||| |||||| || ||||||||||||||||    
T  41427779 ttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttat 41427844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 22338240 - 22338098
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    ||||| |||||||||||||||||| ||||  || |||||||||||||||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |    
T  22338240 tacttaaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatttttaaaccttcact 22338141  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttac 411  Q
    ||||| |||| ||||||||   | ||||| |||||||||||||    
T  22338140 tttaaataataattactttaaatattccactacaaacttttac 22338098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 22620022 - 22619880
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    ||||||| |||||||||||||||| ||||  || |||||||||||||||||| ||||||||||| | ||||| | || |||||||||| ||||||||| |    
T  22620022 tacttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgaattgcctttattattatttttaaaccttcact 22619923  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttac 411  Q
    ||||| |||| ||||||||  |||||||| |||||||||||||    
T  22619922 tttaaataataattactttaattgttccactacaaacttttac 22619880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 27596117 - 27596281
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    |||||||||| |||||||||| ||||  || |||||||||||||||||| ||||| |||||||   ||| |||||| |||||||||||||   |||| ||    
T  27596117 ttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttgcccttgtcattattttgaaactttttcactt 27596216  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| |||||||||| || |||||||||| |||||| || ||||||||||||||||    
T  27596217 ttaagtaatgattattttctttgtttcactacaaactttaacatgg-gaccacaaaaagtatttat 27596281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 285 - 415
Target Start/End: Original strand, 25943690 - 25943823
Alignment:
Q  285 cacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-ttttaagtaatgat 381  Q
    ||||||||| ||||  || |||||||||||||||||| ||||| ||||||| ||||| | |||| ||||||||||||| ||  || ||||||||||||||    
T  25943690 cacagattaagaaaattgtaaagatgaaagaaagagagtgatacttttactgaattgccattgtcattattttgaaactttttcacttttaagtaatgat 25943789  T
Q  382 tactttctttgttccattacaaacttttacatgg 415  Q
    |||||||||||||||| |||||||||| ||||||    
T  25943790 tactttctttgttccactacaaactttaacatgg 25943823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 431
Target Start/End: Original strand, 31689387 - 31689545
Alignment:
Q  276 accatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tttta 372  Q
    |||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| |||||||||||||   |||| |||||    
T  31689387 accatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactttta 31689486  T
Q  373 agtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtat 431  Q
    |  ||||||||||||||||||| || || ||||||| |||||  || ||||||||||||    
T  31689487 aaaaatgattactttctttgtttcactataaactttaacatgaggaccacaaaaagtat 31689545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 24300185 - 24300340
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-tttt 371  Q
    ||||||||||||||||||||| ||||  ||  ||||||||||||||||| ||||| ||||||| | ||| |||||| |  | |||      |||| ||||    
T  24300185 ttgaccatttcacacagattaagaaaagtgtgaagatgaaagaaagagagtgatacttttactgagttgcccttgtaa--acttt------ttcactttt 24300276  T
Q  372 aagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||| || |||||||||| |||||| || ||||||||||||||||    
T  24300277 aagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttat 24300340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 10048 - 10213
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||||||||||| | ||| ||||||||||||||||||||   |||| ||    
T  10048 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttgcccttgttattattttgaaactttttcactt 10147  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| || ||||||| |||||| || ||||||||||||||||    
T  10148 ttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttat 10213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 40497042 - 40496877
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  40497042 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 40496943  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  40496942 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 40496877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 48737798 - 48737630
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca 367  Q
    |||||||| ||||||||||||||| ||||  || | |||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||   ||||    
T  48737798 tacttgacaatttcacacagattaagaaaagtgtagagatgaaagaaagaaaatgatatttttactgaattgcccttgtcattattttgaaactttttca 48737699  T
Q  368 -ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
     |||||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  48737698 cttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 48737630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 51545931 - 51545766
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    |||| |||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  51545931 ttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 51545832  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||| || ||||||||||||||||    
T  51545831 ttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttat 51545766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 24709279 - 24709114
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaa--ccttca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||    |||| ||    
T  24709279 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaattttttcactt 24709180  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||| || |||||||||| |||||  || ||||||||||||||||    
T  24709179 ttaagtaatgattactttctttgtttcactacaaactttaacatgaggaccacaaaaagtatttat 24709114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 48169993 - 48169828
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||| | ||||| |  || |||||| ||||||||||||| ||  || ||    
T  48169993 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatactattactgagctgcccttgtcattattttgaaactttttcactt 48169894  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  48169893 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 48169828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 50676742 - 50676579
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||||||||||| | ||| |||||| |||||||| |||| ||  || ||    
T  50676742 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttg-ccttgtcattattttaaaactttttcactt 50676644  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  50676643 ttaagtaatgattactttctttgttccactacaaactttaacatgg-gaccacaaaaagtatttat 50676579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 54014506 - 54014341
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||  || |||||| ||||||||||| ||||| ||||||| | ||| |||| | ||||||||||||| ||  || ||    
T  54014506 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttgcccttatcattattttgaaactttttcactt 54014407  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  54014406 ttaagtaataattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 54014341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 30462940 - 30462798
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    |||||||||||||||||||||||| ||||  |  |||||||||||||| ||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |    
T  30462940 tacttgaccatttcacacagattaagaaaagtataaagatgaaagaaatagagtgatatttttactgaattgcccttattattatttttaaaccttcact 30462841  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttac 411  Q
    ||||| |||| ||||||||  |||||||| |||||||||||||    
T  30462840 tttaaataataattactttaattgttccactacaaacttttac 30462798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 41346316 - 41346151
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||| ||||||||||||||| ||||  || |||||||||||||||  | ||||| ||||||| | ||| |||||| |||||||| |||| ||  || ||    
T  41346316 ttgactatttcacacagattaagaaaagtgtaaagatgaaagaaagtaagtgatacttttactgagttgcccttgtcattattttaaaactttttcactt 41346217  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  41346216 ttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 41346151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 394
Target Start/End: Original strand, 13542823 - 13542947
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    |||||||||||| | |||||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| |||||||| ||||   |||| ||    
T  13542823 ttgaccatttcatatagattaagaaaagtgtaaagatgaaagaaagagattgatacttttactgagttgcccttgtcattattttaaaactttttcactt 13542922  T
Q  370 ttaagtaatgattactttctttgtt 394  Q
    |||||||||||||||||||||||||    
T  13542923 ttaagtaatgattactttctttgtt 13542947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 1239 - 1083
Alignment:
Q  270 tacttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaaccttca-t 368  Q
    ||||||||||||||||||| ||||   ||| || |||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||| |    
T  1239 tacttgaccatttcacacaaattaaacaag-tgtaaagatgaaagaaagagaatgatatttttactgaattgctcttgttattattttgaaaccttcact 1141  T
Q  369 tttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||         |||||||| |||||||||||||||||||| ||||||||||||||||    
T  1140 tttaagtaatga---------ttgttccactacaaacttttacatggagaccacaaaaagtatttat 1083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 70022 - 69857
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-tt 369  Q
    |||||||||| | |||||||| ||||  || |||||||||||||||||| ||||| ||||||| | |||||||||| |||||||||||||   |||| ||    
T  70022 ttgaccatttgatacagattaagaaaagtgtaaagatgaaagaaagagagtgataattttactgagttgtccttgtcattattttgaaactttttcactt 69923  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||||||||||||||||| |||||||||| | | || || ||||||||||||||||    
T  69922 ttaagtaatgattactttctttgttccactacaaactttaatacggggatcacaaaaagtatttat 69857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 10624 - 10789
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||| |||| | |||| ||||  || |||||||||||||||||| ||||| ||||||| | ||| |||||| ||||||||||||| ||  || ||    
T  10624 ttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcactt 10723  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||    
T  10724 ttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 10789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 415
Target Start/End: Original strand, 92201 - 92345
Alignment:
Q  274 tgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaac--cttca-ttt 370  Q
    ||||||||||||| |||||| ||||  || |||||||||||||||||| ||| | ||||||| | ||| |||||| |||||||||||||   |||| |||    
T  92201 tgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgacacttttactgagttgcccttgtcattattttgaaactttttcacttt 92300  T
Q  371 taagtaatgattactttctttgttccattacaaacttttacatgg 415  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  92301 taagtaatgattactttctttgttccactacaaactttaacatgg 92345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 435
Target Start/End: Complemental strand, 4083 - 3918
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagagaatgatatttttactaaattgtccttgttattattttgaaacctt--ca-tt 369  Q
    ||||||||||||||||||||| ||||   | |||||||||| ||| |||  | || ||||||| | ||  |||||| |||||||| |||| ||  || ||    
T  4083 ttgaccatttcacacagattaagaaaagggtaaagatgaaaaaaaaagagcgctacttttactgagttacccttgtcattattttaaaactttttcactt 3984  T
Q  370 ttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  || | ||||||||||||||    
T  3983 ttaagtaatgattactttctttgttccattacaaactttaacatgaggaccgcaaaaagtatttat 3918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 16528 - 16461
Alignment:
Q  368 ttttaagtaatgattactttctttgttccattacaaacttttacatggagaacacaaaaagtatttat 435  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| || ||||||||||||||||    
T  16528 ttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttat 16461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 16613 - 16565
Alignment:
Q  273 ttgaccatttcacacagattatgaaagatgcaaagatgaaagaaagaga 321  Q
    ||||||||||||||||||||| ||||  || ||||||||||||||||||    
T  16613 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagaga 16565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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