View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12307_low_8 (Length: 325)
Name: NF12307_low_8
Description: NF12307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12307_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 99 - 268
Target Start/End: Original strand, 33535073 - 33535246
Alignment:
| Q |
99 |
ggtttggatttgtgctatggtatggtagatgacgagtttgttcc-gaacaaaaaga----gtgttgttattgtggttgtttatgatcttcggatctttgt |
193 |
Q |
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| T |
33535073 |
ggtttggatttgtgttg-ggtatggtagatgatgagtttgatcccgaaaaaaaaaaattagtgttagtattgtggttgtttatgatcttcggatttgtgt |
33535171 |
T |
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| Q |
194 |
gatttgtgaaggtttatggtgttgatttgtatttctggaaagggttaaggttcatgtgttcttgagattgttcat |
268 |
Q |
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| T |
33535172 |
gatttgtgaaggtttatggtgttgatttgtatttctgaaaagggttaaggttcatgtgttcttgagattgttcat |
33535246 |
T |
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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 23983074 - 23982999
Alignment:
| Q |
209 |
atggtgttgatttgtatttctggaaagggttaaggttcatgtgttcttgagattgttcatgattcttgtgtttttt |
284 |
Q |
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| T |
23983074 |
atggtgttgattcgtatttttggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtgattttt |
23982999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 13273204 - 13273144
Alignment:
| Q |
224 |
atttctggaaagggttaaggttcatgtgttcttgagattgttcatgattcttgtgtttttt |
284 |
Q |
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| T |
13273204 |
atttttggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtgattttt |
13273144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 27977069 - 27977014
Alignment:
| Q |
229 |
tggaaagggttaaggttcatgtgttcttgagattgttcatgattcttgtgtttttt |
284 |
Q |
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| T |
27977069 |
tggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtgattttt |
27977014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 18008371 - 18008316
Alignment:
| Q |
229 |
tggaaagggttaaggttcatgtgttcttgagattgttcatgattcttgtgtttttt |
284 |
Q |
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| T |
18008371 |
tggaaagggtcaaggttcatgtgttcttgagattgttcataatttttgtgattttt |
18008316 |
T |
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