View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12308_low_1 (Length: 528)

Name: NF12308_low_1
Description: NF12308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12308_low_1
NF12308_low_1
[»] chr1 (4 HSPs)
chr1 (101-393)||(42169271-42169572)
chr1 (391-517)||(42169655-42169781)
chr1 (42-83)||(42169212-42169253)
chr1 (416-473)||(48064182-48064241)
[»] chr7 (3 HSPs)
chr7 (101-204)||(21686047-21686150)
chr7 (228-277)||(7725551-7725600)
chr7 (444-473)||(5620261-5620290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (157-263)||(333841-333947)
[»] chr4 (2 HSPs)
chr4 (419-473)||(17823012-17823068)
chr4 (444-472)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (445-473)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (444-472)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 101 - 393
Target Start/End: Original strand, 42169271 - 42169572
Alignment:
Q  101 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42169271 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagatttgtcaaagatgtcattagaaga 42169370  T
Q  201 agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaat-aataatccatggctacac------- 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           
T  42169371 agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaataaataatccatggctacactaactct 42169470  T
Q  293 -attatttgttggtaattaatactactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatga 391  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169471 gattatttgttggtaattaatattactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatga 42169570  T
Q  392 ga 393  Q
    ||    
T  42169571 ga 42169572  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 391 - 517
Target Start/End: Original strand, 42169655 - 42169781
Alignment:
Q  391 agaaataacttatagataagtgaatatcatgataagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 490  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169655 agaaataacttatagataagtgaatatcatgatgagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 42169754  T
Q  491 ctctaacagaaattacattttcacagg 517  Q
    |||||||||||||||||| ||||||||    
T  42169755 ctctaacagaaattacatgttcacagg 42169781  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 42169212 - 42169253
Alignment:
Q  42 gacacgcctttgataagtgagtgctagtgaatgatgtttcta 83  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  42169212 gacacgcctttcataagtgagtaatagtgaatgatgtttcta 42169253  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 473
Target Start/End: Complemental strand, 48064241 - 48064182
Alignment:
Q  416 atcatgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 473  Q
    |||||||||||  |||||||||| ||  || |||||||||||||||||||||| ||||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta 48064182  T

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Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 21686150 - 21686047
Alignment:
Q  101 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga 200  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  21686150 ggcagagtggatgtaatatgaggcaagcaggtatagtgaacatggctgagttaattgagaagcagttagcttcagagttgtcaaagatgtctttagaaga 21686051  T
Q  201 agct 204  Q
    ||||    
T  21686050 agct 21686047  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 7725600 - 7725551
Alignment:
Q  228 ccattatcttactatgatgggtatagctgaaactcaccataggtaataat 277  Q
    ||||||||||||| |||  | |||||||||||||||||||||||||||||    
T  7725600 ccattatcttactgtgactgatatagctgaaactcaccataggtaataat 7725551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 473
Target Start/End: Original strand, 5620261 - 5620290
Alignment:
Q  444 taattaagttgtttatccaaacagggccta 473  Q
    ||||||||||||||||||||||||||||||    
T  5620261 taattaagttgtttatccaaacagggccta 5620290  T

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Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 333841 - 333947
Alignment:
Q  157 gagaagcagttagcttcagagttgtcaaagatgtcattagaagaagctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctg 256  Q
    ||||||||||| ||||||||||| || ||||||   ||||||||||||   || ||||||||||| ||||| || ||||||||||||||| | |||||||    
T  333841 gagaagcagttggcttcagagttatccaagatgaacttagaagaagctcaaacacttgctcgtgcattcagtcactatcttactatgatgagcatagctg 333940  T
Q  257 aaactca 263  Q
    |||||||    
T  333941 aaactca 333947  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 473
Target Start/End: Complemental strand, 17823068 - 17823012
Alignment:
Q  419 atgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 473  Q
    |||||||| ||||||||||||||  || ||||||| |||||||||||||| ||||||    
T  17823068 atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggccta 17823012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 472
Target Start/End: Complemental strand, 30090160 - 30090132
Alignment:
Q  444 taattaagttgtttatccaaacagggcct 472  Q
    |||||||||||||||||||||||||||||    
T  30090160 taattaagttgtttatccaaacagggcct 30090132  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 473
Target Start/End: Complemental strand, 14955625 - 14955597
Alignment:
Q  445 aattaagttgtttatccaaacagggccta 473  Q
    |||||||||||||||||||||||||||||    
T  14955625 aattaagttgtttatccaaacagggccta 14955597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 472
Target Start/End: Original strand, 37308232 - 37308260
Alignment:
Q  444 taattaagttgtttatccaaacagggcct 472  Q
    |||||||||||||||||||||||||||||    
T  37308232 taattaagttgtttatccaaacagggcct 37308260  T

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