View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12308_low_2 (Length: 452)

Name: NF12308_low_2
Description: NF12308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12308_low_2
NF12308_low_2
[»] chr1 (2 HSPs)
chr1 (1-439)||(34287761-34288199)
chr1 (378-420)||(368133-368175)
[»] scaffold0134 (1 HSPs)
scaffold0134 (382-427)||(16972-17017)
[»] chr5 (5 HSPs)
chr5 (368-429)||(42630313-42630374)
chr5 (41-83)||(9575768-9575810)
chr5 (368-425)||(42637973-42638030)
chr5 (377-429)||(42841260-42841312)
chr5 (376-429)||(16487403-16487456)
[»] chr7 (1 HSPs)
chr7 (373-437)||(45866163-45866227)
[»] chr6 (3 HSPs)
chr6 (382-427)||(29144582-29144627)
chr6 (382-427)||(23216690-23216735)
chr6 (383-427)||(29130606-29130650)
[»] chr4 (1 HSPs)
chr4 (377-421)||(48742657-48742701)
[»] scaffold0129 (2 HSPs)
scaffold0129 (377-421)||(17835-17879)
scaffold0129 (377-421)||(34231-34275)
[»] scaffold0054 (2 HSPs)
scaffold0054 (381-429)||(34180-34228)
scaffold0054 (381-429)||(40537-40585)
[»] chr8 (1 HSPs)
chr8 (373-429)||(3368541-3368597)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 34288199 - 34287761
Alignment:
Q  1 cattattatattgtgtaggcatatgatcaagatcaaattgtctccaatagttattttttagacaatatatctcccaaaaagggtaacgtccaccatcttc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34288199 cattattatattgtgtaggcatatgatcaagatcaagttgtctccaatagttattttttagacaatatatctcccaaaaagggtaacgtccaccatcttc 34288100  T
Q  101 atcccttattataggatgaaatgatacatattgaatcaccttataatcatctctatctttgtcataactaaatccacgaagacgaatcacgaatatctga 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  34288099 atcccttattataggatgaaatgatacatgttgaatcaccttataatcatctctatctttgtcataaccaaatccacgaagacgaatcacgaatatatga 34288000  T
Q  201 ttaagactttcatatgctaaatgatgtagaggagcaacatggaattcactagtagccggattccacaatacaactctctgaatttcttcctcaactatcc 300  Q
    ||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34287999 ttaggactttcatatgctaaacgatgtagaggagcaacttggaattcactggtagccggattccacaatacaactctctgaatttcttcctcaactctcc 34287900  T
Q  301 atgctgcaaaacaaataattccattaacaataacagaaccataaataccaacttcaaactcctcctcaaatcgatttggccaatctaatttaaccttatt 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34287899 atgctgcaaaacaaagaattccattaacaataacagaaccataaataccaacttcaaactcctcctcaaatcgatttggccaatctaatttgaccttatt 34287800  T
Q  401 atcaaacctctcaccagaaagagaatacagcacaggttc 439  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  34287799 atcaaacctctcactagaaagagaatacaacacaggttc 34287761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 368175 - 368133
Alignment:
Q  378 ggccaatctaatttaaccttattatcaaacctctcaccagaaa 420  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  368175 ggccaatctaatttcaccttattgtcaaacctcccaccagaaa 368133  T

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Target: scaffold0134 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 16972 - 17017
Alignment:
Q  382 aatctaatttaaccttattatcaaacctctcaccagaaagagaata 427  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||    
T  16972 aatctaatttgaccttattctcaaacctctcaccagaaagagaata 17017  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 42630313 - 42630374
Alignment:
Q  368 aaatcgatttggccaatctaatttaaccttattatcaaacctctcaccagaaagagaataca 429  Q
    |||| ||||||||||||||||||| ||| |||| | ||||||||||||| ||||||||||||    
T  42630313 aaatggatttggccaatctaatttgaccatattttgaaacctctcaccaaaaagagaataca 42630374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 9575768 - 9575810
Alignment:
Q  41 tctccaatagttattttttagacaatatatctcccaaaaaggg 83  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  9575768 tctccaatagttactttttagacaatatatctcccacaaaggg 9575810  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 425
Target Start/End: Original strand, 42637973 - 42638030
Alignment:
Q  368 aaatcgatttggccaatctaatttaaccttattatcaaacctctcaccagaaagagaa 425  Q
    |||| |||||||||||||||||| |||| |||| ||||| ||||| ||||||||||||    
T  42637973 aaatagatttggccaatctaattcaaccctattctcaaatctctctccagaaagagaa 42638030  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 42841260 - 42841312
Alignment:
Q  377 tggccaatctaatttaaccttattatcaaacctctcaccagaaagagaataca 429  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||| ||| ||||    
T  42841260 tggccaatctaatttaactttattttcaaatctctcaccagaaaaagagtaca 42841312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 16487403 - 16487456
Alignment:
Q  376 ttggccaatctaatttaaccttattatcaaacctctcaccagaaagagaataca 429  Q
    |||||||||||||||| | | |||| |||||||||| ||||| |||||||||||    
T  16487403 ttggccaatctaatttgatcctattctcaaacctcttaccagcaagagaataca 16487456  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 45866227 - 45866163
Alignment:
Q  373 gatttggccaatctaatttaaccttattatcaaacctctcaccagaaagagaatacagcacaggt 437  Q
    ||||||||||||| ||||| ||  ||||||||||||||||||| | ||||||||||| |||||||    
T  45866227 gatttggccaatccaatttgacaatattatcaaacctctcaccggcaagagaatacaacacaggt 45866163  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 29144627 - 29144582
Alignment:
Q  382 aatctaatttaaccttattatcaaacctctcaccagaaagagaata 427  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||    
T  29144627 aatctaatttcaccttattctcaaacctctcacccgaaagagaata 29144582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 23216690 - 23216735
Alignment:
Q  382 aatctaatttaaccttattatcaaacctctcaccagaaagagaata 427  Q
    |||||||||| |||||||| |||||| |||| ||||||||||||||    
T  23216690 aatctaatttgaccttattctcaaacgtctccccagaaagagaata 23216735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 29130650 - 29130606
Alignment:
Q  383 atctaatttaaccttattatcaaacctctcaccagaaagagaata 427  Q
    ||||||||| |||||||| |||||  |||||||||||||||||||    
T  29130650 atctaatttgaccttattctcaaaattctcaccagaaagagaata 29130606  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 48742657 - 48742701
Alignment:
Q  377 tggccaatctaatttaaccttattatcaaacctctcaccagaaag 421  Q
    ||||||||||||||| |||||||| |||||| |||||||||||||    
T  48742657 tggccaatctaatttgaccttattctcaaacgtctcaccagaaag 48742701  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 17835 - 17879
Alignment:
Q  377 tggccaatctaatttaaccttattatcaaacctctcaccagaaag 421  Q
    |||||||| |||||| |||||||| ||||||||||||||| ||||    
T  17835 tggccaatttaatttgaccttattctcaaacctctcaccaaaaag 17879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 34231 - 34275
Alignment:
Q  377 tggccaatctaatttaaccttattatcaaacctctcaccagaaag 421  Q
    ||||||||| ||||| |||||||| ||||||||||||||| ||||    
T  34231 tggccaatcaaatttgaccttattctcaaacctctcaccaaaaag 34275  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 34180 - 34228
Alignment:
Q  381 caatctaatttaaccttattatcaaacctctcaccagaaagagaataca 429  Q
    ||||||||||| || ||||| ||||||||||||  ||||||||||||||    
T  34180 caatctaattttactttattctcaaacctctcatgagaaagagaataca 34228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 40537 - 40585
Alignment:
Q  381 caatctaatttaaccttattatcaaacctctcaccagaaagagaataca 429  Q
    ||||||||||| || |||||  |||||||||||| ||||||||||||||    
T  40537 caatctaattttactttattcccaaacctctcacgagaaagagaataca 40585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 429
Target Start/End: Original strand, 3368541 - 3368597
Alignment:
Q  373 gatttggccaatctaatttaaccttattatcaaacctctcaccagaaagagaataca 429  Q
    ||||||||||||||||||| ||| |||| || |||||||| ||  ||||||||||||    
T  3368541 gatttggccaatctaatttgaccctattctcgaacctctccccgaaaagagaataca 3368597  T

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