View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12309_high_3 (Length: 379)
Name: NF12309_high_3
Description: NF12309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12309_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 38830946 - 38831292
Alignment:
| Q |
18 |
cttacgtcctgcaaattatgatggaccaaaggttattgggttcgatgtcgagttgtcaatgtttgaaaataaggtatcagaggaagaaatctacgacaat |
117 |
Q |
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| T |
38830946 |
cttacgtcctgcaaattataatggaccaaaggtaatcgggttcgatgtcgagttgtcaatgtttgaaaataaggtatcagaggaagaaatctacgacaat |
38831045 |
T |
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| Q |
118 |
tccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaactttcttc |
217 |
Q |
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| T |
38831046 |
tccgaatgtgcaactctgcacctatgtaatggccagttgtgtcttattattcagctatgtcatttagattcagttcccacatcattgcttaactttcttc |
38831145 |
T |
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| Q |
218 |
gactgccagattatacctttgtcagtgttggtattaaagatgatttggctaaacttaagaaggaatatgggattagatgcagaaatgctgtggaacttgg |
317 |
Q |
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| T |
38831146 |
gactgccagattatacctttgtcagtgttggtattaaagatgatttggctaagcttaagaaggaatatgggattagatgcagaaatgctgtggaacttgg |
38831245 |
T |
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| Q |
318 |
acctcttgctgctagtgtcttgaaagtgcctcgtttggctttctgtg |
364 |
Q |
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| T |
38831246 |
acctcttgctgctagtgtcttgaaagtgcctcgtttggctttctgtg |
38831292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 38820551 - 38820868
Alignment:
| Q |
18 |
cttacgtcctgcaaattatgatggaccaaaggttattgggttcgatgtcgagttgtcaatgtttgaaaataaggtatcagaggaagaaatctacgacaat |
117 |
Q |
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| T |
38820551 |
cttacatcctgaaaattataaaggacctaaggttatcgggtttgatatcgagttgtcgatgtgtgaaaataaagtatcagaagaagaaaccaattttgag |
38820650 |
T |
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| Q |
118 |
tccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaactttcttc |
217 |
Q |
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| T |
38820651 |
accgaatgtgcaatcttgaatctatgcaatggtcattcgtgtcttattattcagctatgtcatttagattcatttcccacatcattgcttaattttcttc |
38820750 |
T |
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| Q |
218 |
gactgccagattatacctttgtcagtgttggtattaaagatgatttggctaaacttaagaaggaatatgggattagatgcagaaatgctgtggaacttgg |
317 |
Q |
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| T |
38820751 |
gtcttccagattatacctttgttggtgttggtatcaatcataatttggctaaacttgagaaggaatatggggttagatgcagaaatgctgtggaacttgg |
38820850 |
T |
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| Q |
318 |
acctcttgctgctagtgt |
335 |
Q |
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| T |
38820851 |
acccttggctgctagtgt |
38820868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 28159296 - 28159395
Alignment:
| Q |
119 |
ccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaactttcttcg |
218 |
Q |
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|||||| |||||||||||| ||||||| ||| | | ||||||||||||||| ||||||| ||||||| |||||||| |||||||||| |||||||| |
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| T |
28159296 |
ccgaatatgcaactctgcatctatgtattggttattcatgtcttattattcagtcatgtcattaagattcatttcccacaacattgcttaattttcttcg |
28159395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 16081884 - 16081974
Alignment:
| Q |
119 |
ccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaa |
209 |
Q |
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| T |
16081884 |
ccgaatatgcaactctgcatctatgtattggttatttgtgacttattattcagttatgtcattaagattcatttcccacatcattacttaa |
16081974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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