View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12309_low_2 (Length: 403)
Name: NF12309_low_2
Description: NF12309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12309_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 33278992 - 33279373
Alignment:
| Q |
8 |
gagcacagacatatacaaataaatcaatgacaaattgtttcagacatccaaggaaaatgactcatcaaaactgttacaaccctnnnnnnnncaaaagaat |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33278992 |
gagcacggacatatacaaataaatcaatgacaaattgtttcagacatccaaggaaaatgactcatcaaaactgttacaaccctaaaaaaaacaaaagaat |
33279091 |
T |
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| Q |
108 |
accatgtggtttactgtatcaaacatgactaaaggtaacatgcctcatccacgtacaggatcgaggcataatgcccattccttcgacacaaaaaattcct |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33279092 |
accatgtggtttactgtatcaagcatgactaaaggtaacatgcctcatccacgtacaggatcgaggcataatgcccattccttcgacacaaaaaattcct |
33279191 |
T |
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| Q |
208 |
tttaactataacacttaaatatacatacacattcgacaccaaaactgtttctcaatctaaccaactcaacacctcccagcaacaaatccatgccacacaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33279192 |
tttaactataacacttaaatatacatacacattcgacaccaaaactgtttctcaatctaaccaactcaacacctcccagcaacaaatccatgccacacaa |
33279291 |
T |
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| Q |
308 |
gtcaagcagttgatacttggattaccaaatatggttcagcaatcaagaaacacaaaccaggtgcatctgttggtctgaaaag |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33279292 |
gtcaagcagttgatacttggattaccaaatatggttcagcaatcaagaaacacaaaccaggtgcatctgttggtctgaaaag |
33279373 |
T |
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