View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12309_low_5 (Length: 264)
Name: NF12309_low_5
Description: NF12309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12309_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 32612140 - 32611896
Alignment:
| Q |
2 |
ctttgaagatacaaagaatttagaatgttcaaaaaatgctttgaaattgagtagctaggatgcaactaaagagatttatattttgagagtaagaaacaat |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32612140 |
ctttgaagatacaaagtatttagaatgttcaaaaaatgctttgaaattgagtagctaggatgcaactaaagagatttatattttgagagtaagaagcaat |
32612041 |
T |
|
| Q |
102 |
accaagaagaatcaaggattctggaagggcaccaagaatatcaaaagcactagcaccaaaaacacctggaccaagaatcttgaagatttgttcacctcca |
201 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32612040 |
accaagaagaattaaggattctggaagggcaccaagaatatcaaaagcactagcaccaaaaacacctggaccaagaatcttgaatatttgttcacctcca |
32611941 |
T |
|
| Q |
202 |
gcagccaaatatgattctccatggaacaataagtactcataaacc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32611940 |
gcagccaaatatgattctccatggaacaataagtactcataaacc |
32611896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 32630248 - 32630102
Alignment:
| Q |
100 |
ataccaagaagaatcaaggattctggaagggcaccaagaatatcaaaagcactagcaccaaaaacacctggaccaagaatcttgaagatttgttcacctc |
199 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32630248 |
ataccaagaagaattaaggactctggaagggcaccaagaatatcaaaagcactagcaccaaaaacacctggaccaagaatcttgaatatttgttcacctc |
32630149 |
T |
|
| Q |
200 |
cagcagccaaatatgattctccatggaacaataagtactcataaacc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32630148 |
cagcagccaaatatgattctccatggaacaataagtactcataaacc |
32630102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University