View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12310_high_2 (Length: 428)
Name: NF12310_high_2
Description: NF12310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12310_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 25 - 423
Target Start/End: Original strand, 30295302 - 30295700
Alignment:
| Q |
25 |
caatttacattttaggatcggaccatgtgtaacccattttgcaactcgttttgggtgacaactatctgcaccgtatttacgccatgatcaacaatcacct |
124 |
Q |
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| T |
30295302 |
caatttacattttaggatcggaccacgtgtaacccattttgcaactcgtcgtgggtgacaactatttgcaccatatttacgccataatcaacattcccct |
30295401 |
T |
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| Q |
125 |
cggcggacctaacctctggtaaacagtggggcaccatcggggagggcgtggcatcagcacggcaaacaggacaattgagatgtgaaaggagccacatatc |
224 |
Q |
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||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30295402 |
cggtggacctaacctccggtaaacagtggggaaccaccggggagggcgtggcatcagcacggcaaacaggacaattgagatgtgaaaggagccacatatc |
30295501 |
T |
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| Q |
225 |
aatgcatggtacatggaaagagtgcatgcaagaaggcatagccctcaactcctcaccttcctcaaagtctcctaagcacacagcacaagtcacacannnn |
324 |
Q |
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| T |
30295502 |
aatgcatggtacatggaaagagtgcatgcaagaaggcatagccctcaactcctcaccttcctcaaagtctcctaagcacacagcacaagtcacacaatca |
30295601 |
T |
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| Q |
325 |
nnnnnnnnnnnnnnnnnnntccttttcttctcatacttgtaggatggaatctgatgtgacaccaaacttccttcttccgtgctcggcgtctgtgctgct |
423 |
Q |
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| T |
30295602 |
tcatcatcattatcatcattccttttcttctcatacttgtaggatggaatctgatgtgacaccaaacttccttcttccgtgctcagcgtttgtgttgct |
30295700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 311
Target Start/End: Complemental strand, 11034329 - 11034205
Alignment:
| Q |
187 |
caaacaggacaattgagatgtgaaaggagccacatatcaatgcatggtacatggaaagagtgcatgcaagaaggcatagccctcaactcctcaccttcct |
286 |
Q |
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||||| || ||||| | ||| ||| |||||||||| ||||| || |||||| ||||| |||| ||| |||||||| |||||| ||||||||||||| |
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| T |
11034329 |
caaacggggcaattcaaatgcgaatggagccacatgtcaatacactttacatgaaaagaatgcaagcactcaggcatagtcctcaattcctcaccttcct |
11034230 |
T |
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| Q |
287 |
caaagtctcctaagcacacagcaca |
311 |
Q |
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|||| ||||| || ||||| ||||| |
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| T |
11034229 |
caaaatctcccaaacacaccgcaca |
11034205 |
T |
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