View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12310_high_3 (Length: 247)
Name: NF12310_high_3
Description: NF12310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12310_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 31994818 - 31994588
Alignment:
| Q |
16 |
ctgtgtagtttttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31994818 |
ctgtgtagtttttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagc |
31994719 |
T |
|
| Q |
116 |
tttttcctctcctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcacacttatctccacccatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
31994718 |
tttttcctctcctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacaatcaaacttatctccacccatca |
31994619 |
T |
|
| Q |
216 |
ctgactccttgataacatcaatctgttcctc |
246 |
Q |
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|||| |||||||||||||||||||| ||||| |
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| T |
31994618 |
ctgattccttgataacatcaatctgatcctc |
31994588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 15841278 - 15841048
Alignment:
| Q |
16 |
ctgtgtagtttttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagc |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |
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| T |
15841278 |
ctgtgtagttttcccagaaccagtttcaccaacaatcacaagtacttggtgatcatgaacagcttggagaaattcatcccgaaaaggatagataggtagc |
15841179 |
T |
|
| Q |
116 |
tttttcctctcctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcacacttatctccacccatca |
215 |
Q |
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| T |
15841178 |
tttttcctctcctcctgaagtgcctcgaaaactgatctctttgcgctagattttttcaatgcaatctcttgtccataatcaaacttatgtccatccatta |
15841079 |
T |
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| Q |
216 |
ctgactccttgataacatcaatctgttcctc |
246 |
Q |
| |
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|||| |||||||| ||||||||| ||||| |
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| T |
15841078 |
ctgatgccttgatacaatcaatctgctcctc |
15841048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 24009270 - 24009040
Alignment:
| Q |
16 |
ctgtgtagtttttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagc |
115 |
Q |
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|
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||| || || ||| | |||||| |
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| T |
24009270 |
ctgtgtagtttttccggaaccagtttcgccaacaatgacaagtacctggtgatcatgaacagcttggagaaatttatcccgaacagcatagacaggtagt |
24009171 |
T |
|
| Q |
116 |
tttttcctctcctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcacacttatctccacccatca |
215 |
Q |
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||||||||||||||| || ||| || |||| || ||||| |||| ||||||||| |||||| ||||| | | |||| ||||| | ||| |||| | |
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| T |
24009170 |
tttttcctctcctcccgaattgcgtctaaagctgacctcttagctctagatttttctaatgcaacctctttctcataatcaaacttaacaccatccatta |
24009071 |
T |
|
| Q |
216 |
ctgactccttgataacatcaatctgttcctc |
246 |
Q |
| |
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| ||| ||||||| | ||||||||| ||||| |
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| T |
24009070 |
ccgacgccttgattaaatcaatctggtcctc |
24009040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 7286037 - 7285994
Alignment:
| Q |
17 |
tgtgtagtttttccagaaccagtttcaccaacaatgacaagtac |
60 |
Q |
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|||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
7286037 |
tgtgtagtctttccagaaccggtttcaccaacaattacaagtac |
7285994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 7285795 - 7285726
Alignment:
| Q |
62 |
tggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctctcctcct |
131 |
Q |
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||||| ||||||||||| ||||| ||||||||| | ||| ||| || |||| ||||||||||||||||| |
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| T |
7285795 |
tggtggtcatgaacagcttggagcaattcatcccgataagtataaatgggtaactttttcctctcctcct |
7285726 |
T |
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