View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12310_high_4 (Length: 245)
Name: NF12310_high_4
Description: NF12310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12310_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5299225 - 5299468
Alignment:
| Q |
1 |
ctactctatcgagggatgttgagaatgacgcatcaatattacattttagcctccccattgctggttaccgccatctttgctctgctgttctgctagtctg |
100 |
Q |
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| T |
5299225 |
ctactctatcgagggatgttgagaatgacgcatcaatattacattttagcctccccattgctggttaccgccatctttgctctgcagttctgctagtctg |
5299324 |
T |
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| Q |
101 |
ctgttgcgttattggtgctactattatgccttgtaccagca------gaattttgaagtctgcgcataacgcaaatcctccaataagtatttcgcacgct |
194 |
Q |
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| T |
5299325 |
ctgttgcgttattgctgctactattattccttgtaccagcagcgtgtgcattttgaagtctgcgcataacgccaatcctccaataagtgtttcgcgcgct |
5299424 |
T |
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| Q |
195 |
ccagaaagctgctagtttgctgccaaattctgagatctctgctc |
238 |
Q |
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| T |
5299425 |
ccagaaagctgctagtttgctgccaaattctgagatttctgctc |
5299468 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8860518 - 8860616
Alignment:
| Q |
1 |
ctactctatcgagggatgttgagaatgacgcatcaatattacattttagcctccccattgctggttaccgccatctttgctctgctgttctgctagtctg |
100 |
Q |
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||||||||| || |||||||||||||||| |||||| ||||||||| ||| |||| | |||||||| | ||||||||| |||||||||||| ||||||| |
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| T |
8860518 |
ctactctattgatggatgttgagaatgacacatcaacattacatttaagcttcccaaatgctggtt-tctccatctttgttctgctgttctgttagtctg |
8860616 |
T |
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