View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12310_low_1 (Length: 588)
Name: NF12310_low_1
Description: NF12310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12310_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 568
Target Start/End: Complemental strand, 4007765 - 4007226
Alignment:
| Q |
13 |
tgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaaggacagatacg |
112 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4007765 |
tgtgtgcatgatacacgaccaacgatgttctcggtacctaactagagtagcaaagaatcatacaaggtttaaaatcaaggttacagcaaggacagatacg |
4007666 |
T |
|
| Q |
113 |
aatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
4007665 |
aatgtaaagcttagagaaagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaaaaaatggaat |
4007566 |
T |
|
| Q |
213 |
tgtttgattatattaacaaatggaataggactgtgcttagtatcatcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaact |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
4007565 |
tgtttgattatatgaacaaatggaataggactgtgcttagtatcatcctatgtatttccctcctacagttgaagatgaagaatttgatcta--------- |
4007475 |
T |
|
| Q |
313 |
ctagtatgatgcaagtagacacagttaacagttgagttaccaacattactttctatcattatagttttaatacttacacctataaagttcttaaaaacac |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||| || ||||||||||| |||||||||||||| | |
|
|
| T |
4007474 |
-------gatgcaagtagacacagttaacagttgagttaccaacgttactttttataattataattttcattcttacacctattaagttcttaaaaactc |
4007382 |
T |
|
| Q |
413 |
aaccataagcaattcattgacatttaacatactctttttgatactattaagtacggaaaggacatctgactggttcattcgttttctagtaaatttaatt |
512 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
4007381 |
aaccataagtaattcattgacatttaacatactcttttcgatactattaagtacggaaaggacatctgactggttcatttgttttctagtaatattaatc |
4007282 |
T |
|
| Q |
513 |
agtcagtgctttattgaacaatgatctttatttatttatgaattcatcttgatggt |
568 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4007281 |
agtcagtgctttattgaacaatgatcattatttatttatgaattcatcttgatggt |
4007226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 225 - 568
Target Start/End: Complemental strand, 3998588 - 3998243
Alignment:
| Q |
225 |
ttaacaaatggaataggactgtgcttagtatcatcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaactcta--gtatgat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3998588 |
ttaacaaatggaataggactgtgcttagtatcgtcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaactctatagtatgat |
3998489 |
T |
|
| Q |
323 |
gcaagtagacacagttaacagttgagttaccaacattactttctatcattatagttttaatacttacacctataaagttcttaaaaacacaaccataagc |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| || |
|
|
| T |
3998488 |
gcaagtagacacagttaacagttgagttaccaacattactttctatcattatagttttaatacttgcacctattaagttcttgaaaacacaaccattagt |
3998389 |
T |
|
| Q |
423 |
aattcattgacatttaacatactctttttgatactattaagtacggaaaggacatctgactggttcattcgttttctagtaaatttaattagtcagtgct |
522 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3998388 |
aattcattgacatttaacgtactcttttcgatactattaagtacggaaaggacatctgactggttcatttgttttctagtaaatttaatcagtcagtgct |
3998289 |
T |
|
| Q |
523 |
ttattgaacaatgatctttatttatttatgaattcatcttgatggt |
568 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3998288 |
ttattaaacaatgatctttatttatttatgaattcatcttgatggt |
3998243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 3998774 - 3998575
Alignment:
| Q |
13 |
tgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaaggacagatacg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3998774 |
tgtgtgcatgatacacaaccaacaatgttctcggtacctaactagtgtagcaaagaatcatacaaggtttaaaattaaggttacagcaaggacagatacg |
3998675 |
T |
|
| Q |
113 |
aatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
3998674 |
aatgtaaagcttagagaaagacccgaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcatttaacaaatggaat |
3998575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 3957777 - 3958067
Alignment:
| Q |
17 |
tgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaaggacag-atacgaat |
115 |
Q |
| |
|
||||||||| || ||| || |||||| || ||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||||| | || | |
|
|
| T |
3957777 |
tgcatgatatacgacccaccatgttcacgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggacaacacccggct |
3957876 |
T |
|
| Q |
116 |
gtaaagcttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaattgt |
215 |
Q |
| |
|
| | |||||| |||||||||||||||||||||||||||| ||| || ||||||| | || | | || | || || || ||||||||||||| | |
|
|
| T |
3957877 |
ttga----tagagagagaccagaggtggagttaaaagggtttggcatcagacccataatccccttaagagataaaaacatcgttgaacaaatggaattat |
3957972 |
T |
|
| Q |
216 |
ttgattatattaacaaatggaataggactgtgcttagtatcatcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaa |
310 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |||||| |||||||||| ||||| | | ||||||||||||| ||||||||||||||| |
|
|
| T |
3957973 |
ttgattatgttaacaaatggagtaggactgtgcttagcatcatcatatgtatttctttcctccggctgaagatgaagaagttgatttagacacaa |
3958067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 13 - 415
Target Start/End: Complemental strand, 4022923 - 4022542
Alignment:
| Q |
13 |
tgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaaggacagatacg |
112 |
Q |
| |
|
||||||||||||| || |||||| || ||||| ||||||||||| ||||||| ||| ||| |||||||||||| |||||||| ||||||||||| | |
|
|
| T |
4022923 |
tgtgtgcatgatatacgaccaaccattttctcactacctaactagcatagcaaacaataagagaaggtttaaaatcaaggttacggcaaggacagaaatc |
4022824 |
T |
|
| Q |
113 |
aatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatgg-aa |
211 |
Q |
| |
|
||||| | |||| ||||||||||| || ||||||||||| | || |||||||||| | |||| |||||| ||||||||||||||||||| || |
|
|
| T |
4022823 |
aatgtcta---tagaatgagaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgggaa |
4022727 |
T |
|
| Q |
212 |
ttgtttgattatattaacaaatggaataggactgtgcttagtatcatcctatgtatttccttcctacagttgaagatgaagaatttgatttagacacaac |
311 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| |||||| ||| || ||||||||||||| ||||||||| ||||| |
|
|
| T |
4022726 |
ttgtttgattatgttaaccaatggaataggactgtggttagta------------------tccaac---tgaagatgaagaagttgatttagtcacaag |
4022648 |
T |
|
| Q |
312 |
tcta--gtatgatgcaagtagacacagttaacagttgagttaccaacattactttctatcattatagttttaatacttacacctataaagttcttaaaaa |
409 |
Q |
| |
|
|||| | ||||| ||||||||||||||||| ||||| |||| || ||||||| ||| |||||| ||||||||||||||||||| |||||||| |||| |
|
|
| T |
4022647 |
tctatagattgatgtaagtagacacagttaacggttgatttactaatattacttcttataattataattttaatacttacacctattaagttctttaaaa |
4022548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 3984847 - 3984567
Alignment:
| Q |
13 |
tgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaaggacagatacg |
112 |
Q |
| |
|
||||||||||||| || |||||| |||||||| |||||||| || |||| || | ||||||| | ||||||| |||||||||||||||||| ||| | |
|
|
| T |
3984847 |
tgtgtgcatgatatacgaccaaccatgttctcactacctaaccagcatagccaaaagtcagacacaggttaaaatcaaggttacagcaaggaca-atagg |
3984749 |
T |
|
| Q |
113 |
aatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
212 |
Q |
| |
|
| |||| ||||||||||| |||||||| || |||| ||||||| ||| ||||| ||||| || | | |||| | ||| || || | |||||||||| |
|
|
| T |
3984748 |
taa-taaat-ttagagaaagaacagaggtgaagctaaaggggtttggcatcagccctataagtcacacaatatatgacaatttcgttgagcaaatggaat |
3984651 |
T |
|
| Q |
213 |
tgtttgattatattaacaaatggaataggactg---tgcttagtatcatcctatgtatttccttcctacagttgaagatgaaga |
293 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
3984650 |
tgtttgatcgtattaacaaatggaagaggactgtgctgcttagcatcatcctatgtatttccttactgcagctgaagatgaaga |
3984567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 3815523 - 3815439
Alignment:
| Q |
17 |
tgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaa |
101 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3815523 |
tgcatgatacaggaccaacgatgttctgggtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaa |
3815439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 3935705 - 3935767
Alignment:
| Q |
41 |
tctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaagg |
103 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
3935705 |
tctcagtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaagg |
3935767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 3999968 - 3999787
Alignment:
| Q |
13 |
tgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaaggacagatacg |
112 |
Q |
| |
|
|||||| |||||| || ||| || || ||||| ||||||||||||| |||| || ||||| |||||||| ||||| |||||| ||||||||||| | | |
|
|
| T |
3999968 |
tgtgtgtatgatatacgacccaccattttctcagtacctaactagaatagcgaaaaatcatacaaggttcaaaatcaaggttgcagcaaggacaaagccc |
3999869 |
T |
|
| Q |
113 |
aatgtaaagcttagagaaagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctca |
197 |
Q |
| |
|
||| | | |||| ||| || ||||||||||||||||||||| ||| |||||||||| | |||| |||||||| ||||||| |
|
|
| T |
3999868 |
aattt---tcaaagaggaagttcaaaggtggagttaaaagggtttggcatcagccccataaaccactcaacatatcacaatctca |
3999787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 3922317 - 3922410
Alignment:
| Q |
13 |
tgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaagaatcagacaaggtttaaaattaaggttacagcaaggaca |
106 |
Q |
| |
|
|||||| ||||| || |||||| ||||||| | ||||||||||| ||||||| ||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
3922317 |
tgtgtgtatgatttacgaccaaccttgttctcagcacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcatggaca |
3922410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 3815423 - 3815349
Alignment:
| Q |
138 |
aggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
212 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||| | | || |||||||| || ||||||||||||||||||| |
|
|
| T |
3815423 |
aggtgaagttaaaagggtttggcatgagccccataaaccagtcaacatatcaaaacctcattcaacaaatggaat |
3815349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 3922440 - 3922521
Alignment:
| Q |
130 |
aagaccagaggtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaa |
211 |
Q |
| |
|
||||| |||||| ||||||||||||||| ||| |||||||||| | | || ||||||| ||||| ||||||||||||||| |
|
|
| T |
3922440 |
aagacgagaggtaaagttaaaagggtttggcatgagccccataaaccagtcaacatatcgcaatctaattcaacaaatggaa |
3922521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 3807817 - 3807745
Alignment:
| Q |
140 |
gtggagttaaaagggtttgacataagccccataagcaactccacatatcataatctcattcaacaaatggaat |
212 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| |||| | | || |||||||| ||| |||||||||||||||||| |
|
|
| T |
3807817 |
gtggaattaaaagggtttggcatgagccctataaaccagtcaacatatcacaatttcattcaacaaatggaat |
3807745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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