View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12310_low_5 (Length: 251)
Name: NF12310_low_5
Description: NF12310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12310_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 16360398 - 16360173
Alignment:
| Q |
13 |
acctgtgaggtattttcactgctactcagaatctattcatcgttactgttagccatcacaacaaattaaaagtctgcaatcagaaattttcacgacatct |
112 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16360398 |
acctgtgaggtattttcactgctactcagaatttgttcatcgttactgttagccatcacaacaaattaaaagtctgcaatcagaaattttcacgacatct |
16360299 |
T |
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| Q |
113 |
tatcagaacaaagttacaaaattggaagatattatacattcaaatgaaataggcagacacttacatatataaaactccaattttgataaaacccctttgt |
212 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16360298 |
tatcagaacaaagttacaaaaatggaagatattatacattcaaatgaaataggcagacacttacatatataaaaatccaattttgataaaacccctttgt |
16360199 |
T |
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| Q |
213 |
ggatttgcgcttactcactgccacag |
238 |
Q |
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| T |
16360198 |
ggatttgcgcttactcactgccacag |
16360173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 43621205 - 43621431
Alignment:
| Q |
13 |
acctgtgaggtattttcactgctactcagaatctattcatcgttactgttagccatcacaacaaattaaaagtctgcaatcagaaattttcacgacatct |
112 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||| |
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| T |
43621205 |
acctgtgaggtattttcactgctactcataatctgttcattgttactgttagccatcacaacaaattaaaagtctgcattcaaaaaatttcacaacatct |
43621304 |
T |
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| Q |
113 |
tatcagaacaaagttacaaaattggaagatattatacattcaaatgaaataggcagacacttacatatataaaactccaattttgat-aaaacccctttg |
211 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
43621305 |
tatcagaacaaagttaccaaaatgaaagatattatacattcaaatgaaataggcagacacttacgtatataaaactccaattttgataaaaacccctttg |
43621404 |
T |
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| Q |
212 |
tggatttgcgcttactcactgccacag |
238 |
Q |
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| T |
43621405 |
tggatttgcgcttactcactgccacag |
43621431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 34081386 - 34081469
Alignment:
| Q |
153 |
caaatgaaataggcagacacttacatatataaaactccaattttgataaaacccctttgtggatttgcgcttactcactgccaca |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
34081386 |
caaatgaaataggcagacacttacatatataaaactccaattttgataaaacccctttgtggatttgcg-ttactccctgccaca |
34081469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 12720268 - 12720347
Alignment:
| Q |
157 |
tgaaataggcagacacttacatatataaaactccaattttgataaaacccctttgtggatttgcgcttactcactgccaca |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
12720268 |
tgaaataggcagacacttacatatataaaactccaattttgataaaacccctttgtggatttgcg-ttactccctgccaca |
12720347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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