View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12311_high_4 (Length: 384)

Name: NF12311_high_4
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12311_high_4
NF12311_high_4
[»] chr5 (12 HSPs)
chr5 (1-371)||(39470763-39471132)
chr5 (1-277)||(39464540-39464816)
chr5 (5-222)||(39471978-39472195)
chr5 (1-278)||(39460139-39460413)
chr5 (5-217)||(39486406-39486624)
chr5 (1-222)||(39450942-39451163)
chr5 (38-199)||(39458337-39458498)
chr5 (1-217)||(39475453-39475669)
chr5 (5-215)||(39454588-39454798)
chr5 (85-199)||(39480338-39480452)
chr5 (90-199)||(43312608-43312717)
chr5 (5-63)||(39483361-39483419)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 39470763 - 39471132
Alignment:
Q  1 aaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  39470763 aaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagac 39470862  T
Q  101 agttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttcc 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39470863 agttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttcc 39470962  T
Q  201 actgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgnnnnnnnnnnncctttctt 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||    
T  39470963 actttcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctg-ttttttttttcctttctt 39471061  T
Q  301 taggaacaggaatagatgaattcgtgtagagatttagtatcataataaaagaaatctttgtgagtgatgtc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39471062 taggaacaggaatagatgaattcgtgtagagatttagtatcataataaaagaaacctttgtgagtgatgtc 39471132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 39464540 - 39464816
Alignment:
Q  1 aaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagac 100  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||||||| |||||||  || ||||||| ||| ||||| ||||     
T  39464540 aaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagat 39464639  T
Q  101 agttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttcc 200  Q
     ||||||||||| ||||||||| |||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||     
T  39464640 ggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttct 39464739  T
Q  201 actgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatata 277  Q
     || ||||||| ||| |||||| ||||| ||||||||| || ||||||  ||||| ||||||||||| |||||||||    
T  39464740 gctttcttcattttgaagcacaggacatgcacttactcggtttgagttgatgtttttctgaattgttgtttgatata 39464816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 39472195 - 39471978
Alignment:
Q  5 ttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagtt 104  Q
    |||||||||||||||||  ||||| ||||| ||||| |||| |||||||| ||||||||| | ||||||  ||||||||||||| || || || ||||||    
T  39472195 ttctggaaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagtt 39472096  T
Q  105 attcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactg 204  Q
    |||||||| ||||||||| |||||||||||||||| || ||||| |  |||||||||| ||||||  |||| |||||||||| ||||||||||||  ||     
T  39472095 attcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctt 39471996  T
Q  205 tcttcatgttggagcaca 222  Q
    ||||||| ||||||||||    
T  39471995 tcttcatcttggagcaca 39471978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 39460413 - 39460139
Alignment:
Q  1 aaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagac 100  Q
    |||||||||||||||||||||  | ||||||||||||  ||||||  ||||||| ||  ||||| |||||||  |||| ||||| ||||||||| | |||    
T  39460413 aaacttctggaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctgatgtgtatgggagtttcatgactaggac 39460314  T
Q  101 agttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttcc 200  Q
    ||| ||||||||||| |||||| ||||| |||||||||| |||||||| | ||  ||| ||||||| |    | ||||||||||||||||||| |||||     
T  39460313 agtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttct 39460214  T
Q  201 actgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatac 278  Q
     || ||||||| |||||||||| || |||| |||||||  ||| ||||||||||| | ||||||||||||||||||||    
T  39460213 gctttcttcatcttggagcacaggatatacccttactc--tgtaagttactgttt-tttgaattgttctttgatatac 39460139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 39486624 - 39486406
Alignment:
Q  5 ttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatc-agat-----tctgtagtgtgtgggaatttcatgaccaag 98  Q
    |||||||||||||||||| ||||||||||| || ||||||| |||||| | ||||||||| | ||     ||||| |||||||||||||| |||||||||    
T  39486624 ttctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatctgtggtgtgtgggaatttgatgaccaag 39486525  T
Q  99 acagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccactt 198  Q
    |  ||||||||||| ||||||||| |||||||||||||||| || || || | ||  |||||||||||||| ||| | ||  ||||||||| ||||||||    
T  39486524 atggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccactt 39486425  T
Q  199 ccactgtcttcatgttgga 217  Q
    |  || ||||||| |||||    
T  39486424 ctgctttcttcatcttgga 39486406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39451163 - 39450942
Alignment:
Q  1 aaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagac 100  Q
    |||||||||||||||||||||  | ||||||||| ||||| |||| |||||||| || |||||||  |||||   | ||||||||||| || || || ||    
T  39451163 aaacttctggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaaaac 39451064  T
Q  101 agttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttcc 200  Q
    ||||| |||||| ||||||||| | |||||||||||||| ||||| || | ||  ||||||||||| |  ||| | |||||||||||||||||||||||     
T  39451063 agttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttct 39450964  T
Q  201 actgtcttcatgttggagcaca 222  Q
     || ||||||| ||| ||||||    
T  39450963 gctttcttcatcttgaagcaca 39450942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 39458337 - 39458498
Alignment:
Q  38 gatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagc 137  Q
    ||||| || |||||||| |||||||||   |||||| |||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  39458337 gatggcaagggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagc 39458436  T
Q  138 ttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttc 199  Q
    || || || || | ||  |||||||||||||| ||| | ||  ||| ||||| |||||||||    
T  39458437 tttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttc 39458498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 39475669 - 39475453
Alignment:
Q  1 aaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagac 100  Q
    |||||||||||||||||||||  | |||||| || ||||| |||| |||||||| || |||||||  ||||||  ||||||||||||| || || || ||    
T  39475669 aaacttctggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaac 39475570  T
Q  101 agttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttcc 200  Q
    ||||| |||||| ||||||||| | ||||||||||||||  | ||||| |  |  |||| |||||| |  | | |||||||||||||||||||||||||     
T  39475569 agttactcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttct 39475470  T
Q  201 actgtcttcatgttgga 217  Q
     || ||||||| |||||    
T  39475469 gctttcttcatcttgga 39475453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 39454798 - 39454588
Alignment:
Q  5 ttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagtt 104  Q
    |||||||||||||||||   |||  ||||| ||||| ||||  ||||||  ||| ||||||| ||| || | |||||| ||||| | ||| || ||||||    
T  39454798 ttctggaaggttgatgatgcggattgaatcggagattggaagagatttactgtatacatcagtttcagtggcgtgtggaaatttgaggactaaaacagtt 39454699  T
Q  105 attcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactg 204  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| | ||  ||||||| ||| || ||| | ||| |||||||||||||||||||  ||     
T  39454698 attcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacaccacttctgctt 39454599  T
Q  205 tcttcatgttg 215  Q
    |||||||||||    
T  39454598 tcttcatgttg 39454588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 39480452 - 39480338
Alignment:
Q  85 atttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagg 184  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||| || | ||  |||||||||||||| ||| | ||  ||||    
T  39480452 atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagg 39480353  T
Q  185 gataaacaccacttc 199  Q
    ||||| |||||||||    
T  39480352 gataatcaccacttc 39480338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 43312608 - 43312717
Alignment:
Q  90 atgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataa 189  Q
    ||||||||||| ||||  ||||| ||||||||| ||||||| |||||||| || ||||| | ||  || |||| ||| || ||| | ||| |||||||||    
T  43312608 atgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa 43312707  T
Q  190 acaccacttc 199  Q
    ||||||||||    
T  43312708 acaccacttc 43312717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 39483419 - 39483361
Alignment:
Q  5 ttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacat 63  Q
    ||||||||||||||| ||||  ||| ||||| ||||||||| |||||||| ||||||||    
T  39483419 ttctggaaggttgattacattaagaaaatcaaagatgggaagggatttagggtagacat 39483361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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