View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12311_low_11 (Length: 248)
Name: NF12311_low_11
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12311_low_11 |
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| [»] chr7 (12 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 36220799 - 36221037
Alignment:
| Q |
18 |
acataatttacatcacaactccattaatttctactatttcctgattaa----gacatggctgaatcatttg----tgtttgatattgctgattcactgct |
109 |
Q |
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| T |
36220799 |
acataatttacatcccaactccattaatttctactatttcctgattaacattgacatggctgaatcatttgtttgtgtttgatattgctgattcactgct |
36220898 |
T |
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| Q |
110 |
tggaaagcttgcttatgcttttgagcaagcttctcgtgcctactgtgtgtatgatgatctccaagggatcaaagacactttgtcaattgtcagaggtcta |
209 |
Q |
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| T |
36220899 |
tggaaagcttgcttatgcttttgagcaagcttctcgtgcctaccgtgtgtatgatgatctccaagggatcaaagacactttgtcaattgtcagaggtcta |
36220998 |
T |
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| Q |
210 |
ctattggatgccgaggagaagaagaaccaacaacatgct |
248 |
Q |
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| T |
36220999 |
ctattggatgccgaggagaagaagaaccaacaacatgct |
36221037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 36226721 - 36226548
Alignment:
| Q |
68 |
catggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttg---cttatgcttttgagcaagcttctcgtgcctactgtgtgtatgat |
164 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||| |||||||||| ||||| |||||||||| |
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| T |
36226721 |
catggccgaatcatttgtgtttgatattgctgattcgctgcttggaaagcttagttcttatgtttgtgaagaagcttctcgagcctatggtgtgtatgaa |
36226622 |
T |
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| Q |
165 |
gatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgccgaggagaagaagaacca |
238 |
Q |
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| T |
36226621 |
gatctccaacggatcaaagacactttggcaattgttagaggtcttctattggatgctgagcacaagaaggacca |
36226548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 36216868 - 36217043
Alignment:
| Q |
75 |
gaatcatttgtgtttgatattgctgattcactgcttggaaagcttgctt---atgcttttgagcaagcttctcgtgcctactgtgtgtatgatgatctcc |
171 |
Q |
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|||||||||||||||||| ||||| |||||||| | || || ||||||| |||||| ||| |||| |||||||||||| |||| ||||| ||||||| |
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| T |
36216868 |
gaatcatttgtgtttgatgttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctcc |
36216967 |
T |
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| Q |
172 |
aagggatcaaagacactttgtcaattgtcagaggtctactattggatgccgaggagaagaagaaccaacaacatgc |
247 |
Q |
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| T |
36216968 |
aacggatcaaagatactctatcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgc |
36217043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 220
Target Start/End: Complemental strand, 35978274 - 35978119
Alignment:
| Q |
68 |
catggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttg---cttatgcttttgagcaagcttctcgtgcctactgtgtgtatgat |
164 |
Q |
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||||||||||||||||||||||||||||||| |||||||| | ||||| |||| ||||||||| ||| ||||||||| ||||| |||||||| | |
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| T |
35978274 |
catggctgaatcatttgtgtttgatattgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaa |
35978175 |
T |
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| Q |
165 |
gatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgc |
220 |
Q |
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| T |
35978174 |
gatctccaagggttcaaagacactctctcaattgtcagtggtgtattgttggatgc |
35978119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 220
Target Start/End: Complemental strand, 35999686 - 35999531
Alignment:
| Q |
68 |
catggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttg---cttatgcttttgagcaagcttctcgtgcctactgtgtgtatgat |
164 |
Q |
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||||||||||||||||||||||||||||||| |||||||| | ||||| |||| ||||||||| ||| ||||||||| ||||| |||||||| | |
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| T |
35999686 |
catggctgaatcatttgtgtttgatattgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaa |
35999587 |
T |
|
| Q |
165 |
gatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgc |
220 |
Q |
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|||||||||||| ||||||||||| | ||||||||||| ||| || | |||||||| |
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| T |
35999586 |
gatctccaagggttcaaagacactctctcaattgtcagtggtgtattgttggatgc |
35999531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 35982843 - 35982683
Alignment:
| Q |
67 |
acatggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttgct---tatgcttttgagcaagcttctcgtgcctactgtgtgtatga |
163 |
Q |
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||||||| ||||||||||| || || |||| ||||||||||||||||||||| || ||||||| ||| | | |||| | ||||| |||||||||| |
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| T |
35982843 |
acatggcagaatcatttgtcttcgacgttgccgattcactgcttggaaagcttacttcctatgcttatgaagaggtttctggagcctatggtgtgtatga |
35982744 |
T |
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| Q |
164 |
tgatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgccgag |
224 |
Q |
| |
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||| ||||| |||||||||| |||||| ||||||| |||||||| ||||||||| ||||| |
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| T |
35982743 |
agatttccaacggatcaaagatactttggcaattgttagaggtcttctattggattccgag |
35982683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 36004255 - 36004095
Alignment:
| Q |
67 |
acatggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttgct---tatgcttttgagcaagcttctcgtgcctactgtgtgtatga |
163 |
Q |
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||||||| ||||||||||| || || |||| ||||||||||||||||||||| || ||||||| ||| | | |||| | ||||| |||||||||| |
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| T |
36004255 |
acatggcagaatcatttgtcttcgacgttgccgattcactgcttggaaagcttacttcctatgcttatgaagaggtttctggagcctatggtgtgtatga |
36004156 |
T |
|
| Q |
164 |
tgatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgccgag |
224 |
Q |
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||| ||||| |||||||||| |||||| ||||||| |||||||| ||||||||| ||||| |
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| T |
36004155 |
agatttccaacggatcaaagatactttggcaattgttagaggtcttctattggattccgag |
36004095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 35974139 - 35973966
Alignment:
| Q |
69 |
atggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttgctt---atgcttttgagcaagcttctcgtgcctactgtgtgtatgatg |
165 |
Q |
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|
|||||| |||||||||| || |||||||||||||| ||||| || |||||||||| |||| | ||| | |||||||| | || |||||||||||| |
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| T |
35974139 |
atggctaaatcatttgtcttagatattgctgattctctgctagggaagcttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatg |
35974040 |
T |
|
| Q |
166 |
atctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgccgaggagaagaagaaccaa |
239 |
Q |
| |
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| T |
35974039 |
atctacaagatatcaaaaacactttttcaattgtcataggtcttctgttggatgctgagtataagaaggaccaa |
35973966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 35995551 - 35995378
Alignment:
| Q |
69 |
atggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttgctt---atgcttttgagcaagcttctcgtgcctactgtgtgtatgatg |
165 |
Q |
| |
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|||||| |||||||||| || |||||||||||||| ||||| || |||||||||| |||| | ||| | |||||||| | || |||||||||||| |
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| T |
35995551 |
atggctaaatcatttgtcttagatattgctgattctctgctagggaagcttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatg |
35995452 |
T |
|
| Q |
166 |
atctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgccgaggagaagaagaaccaa |
239 |
Q |
| |
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|||| |||| |||||| ||||||| |||||||||| |||||| || |||||||| ||| | |||||| ||||| |
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| T |
35995451 |
atctacaagatatcaaaaacactttttcaattgtcataggtcttctgttggatgctgagtataagaaggaccaa |
35995378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 220
Target Start/End: Complemental strand, 35958819 - 35958664
Alignment:
| Q |
68 |
catggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttgc---ttatgcttttgagcaagcttctcgtgcctactgtgtgtatgat |
164 |
Q |
| |
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|||||| |||||||||| |||||||||||| ||||||| | ||||| ||||| |||||||| ||| |||||||||||||||| |||||||| | |
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| T |
35958819 |
catggcagaatcatttgcctttgatattgctcgttcactgttaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatggtgtgtataaa |
35958720 |
T |
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| Q |
165 |
gatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgc |
220 |
Q |
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||||| |||| | ||||||||||| | ||||||||||| ||| || | |||||||| |
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| T |
35958719 |
gatctacaagagttcaaagacactctctcaattgtcagtggtgtattgttggatgc |
35958664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 36210862 - 36210902
Alignment:
| Q |
66 |
gacatggctgaatcatttgtgtttgatattgctgattcact |
106 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
36210862 |
gacatggctgaatcatttgtgtttaatattgctgattcact |
36210902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 35931068 - 35930982
Alignment:
| Q |
68 |
catggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttg---cttatgcttttgagcaagcttctcgtgccta |
151 |
Q |
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|
||||||||||||||||| |||||||||| | ||||||| | ||||| |||| ||||||||| ||| |||||||||||||||| |
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| T |
35931068 |
catggctgaatcatttgcctttgatattgttcattcactattaggaaaacttgcatcttatgcttatgaagaagcttctcgtgccta |
35930982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 26328076 - 26328117
Alignment:
| Q |
160 |
atgatgatctccaagggatcaaagacactttgtcaattgtca |
201 |
Q |
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| T |
26328076 |
atgaagatctacaagggatcaaagacactttgtcaattgtca |
26328117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 26328010 - 26328066
Alignment:
| Q |
67 |
acatggctgaatcatttgtgtttgatattgctgattcactgcttggaaagcttgctt |
123 |
Q |
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||||||| || |||||| | |||||||||||||||||||| |||| ||||||||||| |
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| T |
26328010 |
acatggcagattcatttctctttgatattgctgattcactccttgaaaagcttgctt |
26328066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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