View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12311_low_12 (Length: 236)
Name: NF12311_low_12
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12311_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 44901000 - 44901206
Alignment:
| Q |
10 |
ggagcagcacagaagagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttattttta |
109 |
Q |
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| T |
44901000 |
ggagcaccatagaagagggaacaggtggcaaatcaccaagatcatcacaacgcaagaaaaccggtttaaataacttcaaaactagaaaggcttattttta |
44901099 |
T |
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| Q |
110 |
ttgggtggcggcgaaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcac |
209 |
Q |
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| T |
44901100 |
ttgggtggcggcgaaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcac |
44901199 |
T |
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| Q |
210 |
ttgacta |
216 |
Q |
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||||||| |
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| T |
44901200 |
ttgacta |
44901206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 44892361 - 44892553
Alignment:
| Q |
24 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
123 |
Q |
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| T |
44892361 |
gagggaacaattggtaaatcatcaagaccatcagaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtg |
44892460 |
T |
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| Q |
124 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgacta |
216 |
Q |
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| T |
44892461 |
aacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgacta |
44892553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 44917764 - 44917937
Alignment:
| Q |
24 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
123 |
Q |
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||||||||| || | |||||||| ||| ||||||||||||||| ||||||||| |||| ||| ||||||| | |||||||||||| ||||| | |
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| T |
44917764 |
gagggaacaagtagtaaatcaccgagaccatcacaacacaagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttactagag |
44917863 |
T |
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| Q |
124 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgag |
197 |
Q |
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| T |
44917864 |
aacagggttcatttgattggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgag |
44917937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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