View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12311_low_14 (Length: 231)
Name: NF12311_low_14
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12311_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 2606702 - 2606916
Alignment:
| Q |
2 |
tcatttgtatatttagatatcagttaannnnnnnnnnngtcgcatccttttctaataacaggcatactgctctgaaatttttcgagaagaaaagcaagct |
101 |
Q |
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| T |
2606702 |
tcatttgtatatttagatatcagttaatttttttttttgtcgcatccttttctaataacaggcatactgctctgaaatttttcgagaagaaaagcaagct |
2606801 |
T |
|
| Q |
102 |
cttggactctcagctgtaagcttctgtaatctttctccgacaagtgtcgatgtccgacacctataaggcattgagtaaatataaattgactctgttgtat |
201 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2606802 |
cttggactctcaactgtaagcttctgtaatctttctccgacaagtgtcgatgtccgacacctataaggcattgagtatatataaattgactctgttgtat |
2606901 |
T |
|
| Q |
202 |
agttgatacacacag |
216 |
Q |
| |
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||||||||||||||| |
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| T |
2606902 |
agttgatacacacag |
2606916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 26370636 - 26370521
Alignment:
| Q |
44 |
catccttttctaataacaggcatactgctctgaaatttttcgagaagaaaagcaagctcttggactctcagctgtaagcttctgtaatctttctccgaca |
143 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||| | |
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| T |
26370636 |
catccttttctaataacaggcttactgctctgaaatttttcgagaagaaaagcaagcttttggactctcaactgtaagcttctataatctttgtccga-a |
26370538 |
T |
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| Q |
144 |
agtgtcgatgtccgaca |
160 |
Q |
| |
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||||||||||||||||| |
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| T |
26370537 |
agtgtcgatgtccgaca |
26370521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 26370387 - 26370343
Alignment:
| Q |
172 |
ttgagtaaatataaattgactctgttgtatagttgatacacacag |
216 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26370387 |
ttgagtatatataaattgactctgttgtatagttgatacacacag |
26370343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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