View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12311_low_2 (Length: 533)
Name: NF12311_low_2
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12311_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 22 - 519
Target Start/End: Complemental strand, 38893190 - 38892693
Alignment:
| Q |
22 |
gctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagat |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893190 |
gctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagat |
38893091 |
T |
|
| Q |
122 |
cataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctgaatttg |
221 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893090 |
cataggcatcagtaaagaatcccattccagcaatgatgattgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctgaatttg |
38892991 |
T |
|
| Q |
222 |
ctcctttgccattacttttcaatctaaagtcactagttgccttctgtttctctcttcttgccttccctgcaaaaagtggacccaagaataagaattgatt |
321 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38892990 |
ctcctttgccattacttttcaatctaaagtcactagtttccttctgtttctctcttcttgccttccctgcaaaaagtggaaccaagaataagaattgatt |
38892891 |
T |
|
| Q |
322 |
aaatgagtcatctttattttgaattggttcaaatgtgagcgtaattaatcaaactaaaatgttatcaaatgaaatcaaccaataataattacaccatgaa |
421 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892890 |
aaatgagtcatctttattttgaattggttcaaatgtgagcgtaattaatcaaactaaaatgttatcaaatgaaatcaaccaataataattacaccatgaa |
38892791 |
T |
|
| Q |
422 |
ttgtaccatcgcatcggaaattgaccctctacaacgaaaaataagaaagaaataagtcgaagaaaatttatttatttggttcaaattgtagaccaaat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38892790 |
ttgtaccatcgcatcggaaattgaccctctacaacgaaaaataaaaaagaaataagtcgaagaaaattgatttatttggttcaaattgtagaccaaat |
38892693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 38883998 - 38883777
Alignment:
| Q |
22 |
gctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagat |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||||||||| ||||| |||||||| || |||||||| ||||||||||||| |||||||||| |
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| T |
38883998 |
gctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagat |
38883899 |
T |
|
| Q |
122 |
cataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctgaatttg |
221 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
38883898 |
cataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcatttagcacctgaatttg |
38883799 |
T |
|
| Q |
222 |
ctcctttgccattacttttcaa |
243 |
Q |
| |
|
||||| ||||| ||| ||||| |
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| T |
38883798 |
atccttagccatgactattcaa |
38883777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 30620927 - 30621081
Alignment:
| Q |
61 |
ccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatga |
160 |
Q |
| |
|
||||| |||||||| || ||||| || || | ||| || ||||||||||||||||| ||||| || ||||| || ||||| |||||||||||||||| | |
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| T |
30620927 |
ccatcgacatggtagtaaatgcgaccgagtagctttgtgacaagggatatgcagaatagatcgtatgcatcggtgaagaagcccattccagctatgacaa |
30621026 |
T |
|
| Q |
161 |
ttgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctg |
215 |
Q |
| |
|
|||||||||| || |||||||| |||||||| ||||| ||||||||||||||||| |
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|
| T |
30621027 |
ttgctgtgaaatggtaccattgtgttttcgctacatctagtgcatttagcacctg |
30621081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 16223312 - 16223190
Alignment:
| Q |
90 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
189 |
Q |
| |
|
|||||| || |||||||| |||||||| |||||||| ||||| || ||||||||||||||||| || | |||| |||||||||||| |||| || || |
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|
| T |
16223312 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattgtagtgaagtgatacaattgtgtcttg |
16223213 |
T |
|
| Q |
190 |
gccacatcaagtgcatttagcac |
212 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
16223212 |
gccacatcaagtgcatttagcac |
16223190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 33115062 - 33114936
Alignment:
| Q |
88 |
agcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttt |
187 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||| ||| || || || ||||||||||| |||| ||||| || || |||||||| || || | |
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|
| T |
33115062 |
agcaatttggtaacaagggaaatgcagaagagatcataggaatcagtgaaaaaacccattccagcaatgacaattgcagtaaaatgataccactgtgtct |
33114963 |
T |
|
| Q |
188 |
tcgccacatcaagtgcatttagcacct |
214 |
Q |
| |
|
| || |||||||||||||| ||||||| |
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|
| T |
33114962 |
tggctacatcaagtgcattaagcacct |
33114936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 16183922 - 16183800
Alignment:
| Q |
90 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
189 |
Q |
| |
|
|||||| || |||||||| |||||||| |||||||| ||||| || |||||||||||||||||||| | |||| ||||| || ||| ||||||| || |
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|
| T |
16183922 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagctatcacaattgtagtgaaatggtacaattgcgtcttt |
16183823 |
T |
|
| Q |
190 |
gccacatcaagtgcatttagcac |
212 |
Q |
| |
|
|| ||||| |||||||| ||||| |
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|
| T |
16183822 |
gcgacatcgagtgcattaagcac |
16183800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 16175440 - 16175559
Alignment:
| Q |
90 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
189 |
Q |
| |
|
|||||| |||||||| || |||||||| |||||||| ||||| || ||||| |||||||||||||| | |||| ||||| || ||| |||| || || |
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|
| T |
16175440 |
caactttgtaacaagagaaatgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattgtagtgaaatggtacaattgtgtcttt |
16175539 |
T |
|
| Q |
190 |
gccacatcaagtgcatttag |
209 |
Q |
| |
|
|||||||| ||||||||||| |
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|
| T |
16175540 |
gccacatctagtgcatttag |
16175559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 33109012 - 33108900
Alignment:
| Q |
100 |
acaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttcgccacatcaa |
199 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| || || || ||||||||||| || | ||||||||||| || ||| ||| || ||||||||||| | |
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|
| T |
33109012 |
acaagggaaatgcaaaagagatcataggcatcagtgaaaaaacccattccagcaatcacaattgctgtgaaatggtacatttgtgtcttcgccacatcga |
33108913 |
T |
|
| Q |
200 |
gtgcatttagcac |
212 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
33108912 |
gtgcattaagcac |
33108900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 9700035 - 9700078
Alignment:
| Q |
109 |
atgcagaacagatcataggcatccgtaaagaatcccattccagc |
152 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
9700035 |
atgcagaacagatcataggcatcagtgaagaatcccatgccagc |
9700078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 37316137 - 37316274
Alignment:
| Q |
72 |
gtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaag |
171 |
Q |
| |
|
||||||||| | ||| || |||||||||||| | ||||||||| || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| |
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|
| T |
37316137 |
gtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaa |
37316236 |
T |
|
| Q |
172 |
tgataccattgcgttttcgccacatcaagtgcatttag |
209 |
Q |
| |
|
|| |||||||| ||||| || ||||||| ||| |||| |
|
|
| T |
37316237 |
tggtaccattgtgttttggctgcatcaagggcagttag |
37316274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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