View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12311_low_5 (Length: 449)
Name: NF12311_low_5
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12311_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 404419 - 404085
Alignment:
| Q |
18 |
aatgtaaaaggaaaatgtgtgtccacagataagtgacaaagcttgagattaacaagggttgtacaacgcagaatgttggtaggaaagtgagctcgtctag |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
404419 |
aatgtaaaaggaaaatttgtgtccacagataagtgacaaagcttgagattaacaagggttgtacaacgcagaatgttggtaggaaagtgagctcgtctag |
404320 |
T |
|
| Q |
118 |
gctcccaagtattgatagcatgaatagagagatacattatcagcatatatagttgatccatttgttgaggaatttgaaatgaatcgtattcaatgtcgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
404319 |
gctcccaagtattgatagcatgaatagagagatacattaacagcatatatagttgaaccatttgttgaggaatttgaaatgaattgtattcaatgtcgag |
404220 |
T |
|
| Q |
218 |
gaagaaactgttgatggaatgaaaaccaacgagttctcgctcaagaaacatggaggaaaaaatatggttgaaaagctgaagtctataacgggaacgaaag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
404219 |
gaagaaactgttgatggaatgaaaaccaacgagttctcgctcaagaaaaatggaggaaaaaatatggttgaaacgctgaagtctataacgggaacgaaag |
404120 |
T |
|
| Q |
318 |
gccatagaggacgaatgttccatctcttggagaga |
352 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
404119 |
gccataggggacgaatgttccatctcttggagaga |
404085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 404090 - 404043
Alignment:
| Q |
389 |
gagagaatgtggcaaatgatctcatctggtaaactgctcaacctgtct |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
404090 |
gagagaatgtggcaaatgatctcatctggtaaactgctcaacctgtct |
404043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 975456 - 975497
Alignment:
| Q |
198 |
gaatcgtattcaatgtcgaggaagaaactgttgatggaatga |
239 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
975456 |
gaatcgtattcaatgtcaaggatgaaagtgttgatggaatga |
975497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University