View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12311_low_7 (Length: 372)

Name: NF12311_low_7
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12311_low_7
NF12311_low_7
[»] chr5 (21 HSPs)
chr5 (11-353)||(39464370-39464712)
chr5 (91-353)||(39470673-39470935)
chr5 (91-349)||(39486454-39486718)
chr5 (91-349)||(39472031-39472289)
chr5 (91-346)||(39450998-39451256)
chr5 (91-331)||(39475519-39475762)
chr5 (91-346)||(39460248-39460503)
chr5 (91-342)||(39454641-39454892)
chr5 (91-349)||(39458210-39458468)
chr5 (91-243)||(39483361-39483513)
chr5 (11-75)||(39470572-39470636)
chr5 (17-81)||(39486755-39486819)
chr5 (282-349)||(39480368-39480435)
chr5 (267-333)||(43312605-43312671)
chr5 (27-84)||(39451287-39451344)
chr5 (36-81)||(39483547-39483592)
chr5 (20-81)||(39460537-39460598)
chr5 (36-76)||(39472325-39472365)
chr5 (20-75)||(39458118-39458173)
chr5 (42-81)||(43312380-43312419)
chr5 (36-81)||(39475796-39475841)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 39464370 - 39464712
Alignment:
Q  11 cacagacgcagggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtggtgacattgaggttagagacggcttgt 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39464370 cacaaacgcagggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtggtgacatcgaggttagagacggcttgt 39464469  T
Q  111 ttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctggaaggttgatgacattaagag 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464470 ttgacgtttggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaacttctggaaggttgatgacattaagag 39464569  T
Q  211 aatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttactcggagacggttatcacggttgat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39464570 aatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttattcggagacggttatcacggttgat 39464669  T
Q  311 tagaagcttcgcaaactcaagggcagaaactagatgacctaca 353  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39464670 tagaagcttcgcaaactcaagggcagaaactagatgacctaca 39464712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 91 - 353
Target Start/End: Original strand, 39470673 - 39470935
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 190  Q
    ||||||| ||||  |||||||||||||||| ||| ||||| || ||||||||||||||  | |||||||||||||||||| || ||| ||||||||||||    
T  39470673 tgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggatcagaggttgggagaacagaaacttctgg 39470772  T
Q  191 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttactcgg 290  Q
    ||||||||||||||  ||||||||||| |||||||||||||||| ||||||||| |||||||| || ||||||| ||| ||||||||||  |||| || |    
T  39470773 aaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagacagttattcag 39470872  T
Q  291 agacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctaca 353  Q
    || ||||||||| |||||||||||||||| || ||||| | ||||||||||||||||||||||    
T  39470873 aggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctaca 39470935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 91 - 349
Target Start/End: Complemental strand, 39486718 - 39486454
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 190  Q
    ||||||| || || |||||||||||||||||||| ||||| |||||||||||||||||  |  ||| ||| || | | || |||||||||||  ||||||    
T  39486718 tgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgg 39486619  T
Q  191 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcgg-at-----tctgcggtttgtgggagtttgatgactaagatggtt 284  Q
    |||||||||||| |  |||||||| || ||||||| |||||| ||||||||||||  ||     |||| ||| ||||||| ||||||||| |||||||||    
T  39486618 aaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatctgtggtgtgtgggaatttgatgaccaagatggtt 39486519  T
Q  285 actcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacc 349  Q
    | ||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  39486518 attcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgacc 39486454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 91 - 349
Target Start/End: Complemental strand, 39472289 - 39472031
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 190  Q
    |||||||||| ||  ||||||||||||||||||| ||||| || ||||| ||  |||| | || |||| |||| | | || ||| |||||||  ||||||    
T  39472289 tgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagggaccttgatctgtgtttggggcaagagaacattctgg 39472190  T
Q  191 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttactcgg 290  Q
    |||||||||||  |  || ||||| || || |||| |||||||||||||||||||| ||||| | | ||||||| |||||| ||||| |  |||| ||||    
T  39472189 aaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcgg 39472090  T
Q  291 agacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacc 349  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||    
T  39472089 agacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgacc 39472031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 91 - 346
Target Start/End: Complemental strand, 39451256 - 39450998
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattg---cggaacctggatcagaggtttggggaagagaaacttc 187  Q
    |||||||||| |||||||||||||| |||||||| ||||| || ||||||||   ||| |   || |||||||||  | | || | ||||||||||||||    
T  39451256 tgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttc 39451157  T
Q  188 tggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttact 287  Q
    ||||||||||||||  || |||||||| || || |||| ||||||||||| ||||||   |||||   | ||||||| |||||| ||||| |  ||||||    
T  39451156 tggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaaaacagttact 39451057  T
Q  288 cggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatg 346  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||  |||||||||||    
T  39451056 cggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatg 39450998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 331
Target Start/End: Complemental strand, 39475762 - 39475519
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcgga---acctggatcagaggtttggggaagagaaacttc 187  Q
    ||||||| ||||| |||||||| ||||||||||| ||||| || ||||||||  |||| |  ||   ||||||||| | | || ||||||||||||||||    
T  39475762 tgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttc 39475663  T
Q  188 tggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttact 287  Q
    ||||||||||||||  || ||||| || || || |||| ||||||||||| ||||||   |||||   | ||||||| |||||| ||||| |  ||||||    
T  39475662 tggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttact 39475563  T
Q  288 cggagacggttatcacggttgattagaagcttcgcaaactcaag 331  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  39475562 cggagacggttatcacgattgattagaagcttcacaaactcaag 39475519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 91 - 346
Target Start/End: Complemental strand, 39460503 - 39460248
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggttt-ggggaagagaaacttctg 189  Q
    |||| ||||| ||||||||||||||||||| ||| ||||| || |||| |||  |||||  ||||  ||| || || |||| ||||||||||||||||||    
T  39460503 tgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagttggttc-gatgtttgggggaagagaaacttctg 39460405  T
Q  190 gaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttactcg 289  Q
    ||||||||||||  |  |||||||||||  ||||||  ||||||||||  |||||||||||||  || | ||||||||| ||||||| ||  || | |||    
T  39460404 gaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctgatgtgtatgggagtttcatgactaggacagtaattcg 39460305  T
Q  290 gagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatg 346  Q
    ||| || |||||||||||| |||||||||| || ||||||||||  ||| |||||||    
T  39460304 gaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatg 39460248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 342
Target Start/End: Complemental strand, 39454892 - 39454641
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 190  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||| |||||  ||| | |||| |||||| || | || ||||||||||   ||||||    
T  39454892 tgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctgg 39454793  T
Q  191 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttactcgg 290  Q
    |||||||||||     |  ||||| || || ||||  |||||| |||| ||||| | ||| | ||  ||||| | ||||| |||||| |  |||| ||||    
T  39454792 aaggttgatgatgcggattgaatcggagattggaagagatttactgtatacatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcgg 39454693  T
Q  291 agacggttatcacggttgattagaagcttcgcaaactcaagggcagaaacta 342  Q
    |||||||||||||||||||||||||| ||||| ||||||||||  |||||||    
T  39454692 agacggttatcacggttgattagaagtttcgcgaactcaagggtggaaacta 39454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 91 - 349
Target Start/End: Original strand, 39458210 - 39458468
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 190  Q
    ||||||| |||||||||| ||||||||||||||| ||||| |  |||||| |   |||  |||||  |  ||  ||| || |||||||||||  ||||||    
T  39458210 tgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacattctgg 39458309  T
Q  191 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttactcgg 290  Q
    ||||| ||  |  |||||||||||    |||| || ||||||||||||||||||   |||||  || ||||| | ||| ||||| ||||| |||| ||||    
T  39458310 aaggtcgacaatgttaagagaatcgtcgatggcaagggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcgg 39458409  T
Q  291 agacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacc 349  Q
    ||||||||||||||||||||||||||||| ||||| || ||||  ||||||||||||||    
T  39458410 agacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgacc 39458468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 243
Target Start/End: Complemental strand, 39483513 - 39483361
Alignment:
Q  91 tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg 190  Q
    ||||||| ||||| |||||| | | ||||||||| ||||| |||||||||||||| || || ||| || ||||  || || |||||||| ||  ||||||    
T  39483513 tgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcagaaactagatcgaagtttgggggaagataacattctgg 39483414  T
Q  191 aaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacat 243  Q
    ||||||||| ||||||||| ||||| | ||||||| |||||||| ||||||||    
T  39483413 aaggttgattacattaagaaaatcaaagatgggaagggatttagggtagacat 39483361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 39470572 - 39470636
Alignment:
Q  11 cacagacgcagggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaa 75  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  39470572 cacaaacgcagggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaa 39470636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 39486819 - 39486755
Alignment:
Q  17 cgcagggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 81  Q
    |||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  39486819 cgcagggatggaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgaagg 39486755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 39480435 - 39480368
Alignment:
Q  282 gttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacc 349  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||||||  ||||||||||||||    
T  39480435 gttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgacc 39480368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 43312605 - 43312671
Alignment:
Q  267 ttgatgactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaaggg 333  Q
    |||||||| |||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  43312605 ttgatgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaaggg 43312671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 39451344 - 39451287
Alignment:
Q  27 gaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtgg 84  Q
    |||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||    
T  39451344 gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtgg 39451287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 39483592 - 39483547
Alignment:
Q  36 ttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 81  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  39483592 ttggcaacatcaatcatggtggtgcagaacatgtcaacaacgaagg 39483547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 39460598 - 39460537
Alignment:
Q  20 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 81  Q
    |||||| |||||||| ||||||| ||||||||| || |||||||||||||||||||| ||||    
T  39460598 agggactgaaaattctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaagg 39460537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 39472365 - 39472325
Alignment:
Q  36 ttggcaacatcaatcatgttggtgcagaacatgtcaacaac 76  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39472365 ttggcaacatcaatcatgtttgtgcagaacatgtcaacaac 39472325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 39458118 - 39458173
Alignment:
Q  20 agggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaa 75  Q
    |||||| |||||||| ||  |||||||||||||| |||||||||||||||||||||    
T  39458118 agggacagaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaa 39458173  T

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Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 43312380 - 43312419
Alignment:
Q  42 acatcaatcatgttggtgcagaacatgtcaacaacgaagg 81  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43312380 acatcaatcatggtggtgcagaacatgtcaacaacgaagg 43312419  T

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Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 39475841 - 39475796
Alignment:
Q  36 ttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 81  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||    
T  39475841 ttggcaacattgatcatggtggtgcagaacatgtcaacaacgaagg 39475796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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