View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12311_low_9 (Length: 274)
Name: NF12311_low_9
Description: NF12311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12311_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 32931646 - 32931398
Alignment:
| Q |
11 |
cacagacagacacaaaacaaaacacagaatgaaaatgcaatggctatgttgtttgtttgtttgtt----cctataggtacatgatgagagtggttgagaa |
106 |
Q |
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| T |
32931646 |
cacatacagacacaaaacaaaacatagaatgaaaatgcaatggctatgttgtttgtttgtttgtttgttcctataggtacatgatgagagtggttgagaa |
32931547 |
T |
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| Q |
107 |
gaaggaatttccacgacacttccttagaaaacaaaatgaaataaaaattgataatatgatttgaatttgcacgtacttcttaaaatggtacgtaatgaat |
206 |
Q |
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| T |
32931546 |
gaaggaatttccacgacaattccttagaaaacaaaatgaaataaaaattgataatatgatttgaatttgcacgtacttcttaaaatggtacgtaatgaat |
32931447 |
T |
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| Q |
207 |
gaatattataaagagttgaaaaagaaccgtgtttgtgaatggttaatga |
255 |
Q |
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| T |
32931446 |
gaatattataaagagttgaaaaagaaccgtgtttgtgaatggttaatga |
32931398 |
T |
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