View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12312_high_1 (Length: 479)
Name: NF12312_high_1
Description: NF12312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12312_high_1 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 36893380 - 36892901
Alignment:
| Q |
1 |
gtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893380 |
gtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaagga |
36893281 |
T |
|
| Q |
101 |
aacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893280 |
aacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaa |
36893181 |
T |
|
| Q |
201 |
atttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaatttaacataaataaaaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893180 |
atttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaatttaacataaataaaaaata |
36893081 |
T |
|
| Q |
301 |
atcacatggatcaacttgtacaaacattttcacttggaagagataaagattatac-attttatgtacctgaaaccattttatatcccacatcatttgcaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893080 |
atcacatggatcaacttgtacaaacattttcacttggaagagataaagattatacaattttatgtacctgaaaccattttatatcccacatcatttgcaa |
36892981 |
T |
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| Q |
400 |
ggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaaatgcaatactgtattctcatcctcat |
479 |
Q |
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| T |
36892980 |
ggcagaaccagcaatctgccaaggtttatcaccacctaatgcctcggctgccaaatgcaatactgtattctcatcctcat |
36892901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36883377 - 36883098
Alignment:
| Q |
1 |
gtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaagga |
100 |
Q |
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||||||||||||||||| | || ||||||||||||||||||||||| || || |||| ||| ||||||||||||||||| |||||||||||||||||| |
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| T |
36883377 |
gtgaagaaatggcaaaggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtacttggcttgctgtggcaaagga |
36883278 |
T |
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| Q |
101 |
aacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaa |
200 |
Q |
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|||||| ||||||||| ||||||| || ||||||||||| || |||||||||||||| ||| || |||| ||||||| || ||||||| |||||||| |
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| T |
36883277 |
aacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataagattttcgtgtgttgtcttgaaa |
36883178 |
T |
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| Q |
201 |
atttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaa |
280 |
Q |
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||||| |||||||||||||| || ||||| |||| || |||||||||||| |||||||||||||| ||||||||||| |
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| T |
36883177 |
atttcacttgatgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctccaa |
36883098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 360 - 476
Target Start/End: Complemental strand, 36881936 - 36881820
Alignment:
| Q |
360 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaaatgcaa |
459 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||| |
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| T |
36881936 |
tatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggtttaccatcacctagtgcctttgctgccaaatgcaa |
36881837 |
T |
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| Q |
460 |
tactgtattctcatcct |
476 |
Q |
| |
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|| ||||||||| |||| |
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| T |
36881836 |
tattgtattctcctcct |
36881820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 36903168 - 36902908
Alignment:
| Q |
15 |
aagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaa |
114 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||| || |||| ||||| |||||| ||||||| |||| |
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| T |
36903168 |
aagacattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaa |
36903072 |
T |
|
| Q |
115 |
gggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgt |
214 |
Q |
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| || | |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||| |
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| T |
36903071 |
gcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgt |
36902972 |
T |
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| Q |
215 |
tttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
278 |
Q |
| |
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|||||| || ||||| || | ||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
36902971 |
tttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctcc |
36902908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 36902141 - 36902028
Alignment:
| Q |
360 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaa---tctgccaaggtttatcaccacctaatgcctctgctgccaaatg |
456 |
Q |
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||||||||||||||||||| ||||||||||||||||| || ||||| | ||||| |||| | |||||||||| || || |||||||||||||||||| |
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| T |
36902141 |
tatgtacctgaaaccatttcatatcccacatcatttgtaatgcagacctagcaatattctgtccaggtttatcaacagcttgtgcctctgctgccaaatg |
36902042 |
T |
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| Q |
457 |
caatactgtattct |
470 |
Q |
| |
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||||| |||||||| |
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| T |
36902041 |
caatattgtattct |
36902028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 23278879 - 23278833
Alignment:
| Q |
364 |
tacctgaaaccattttatatcccacatcatttgcaaggcagaaccag |
410 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
23278879 |
tacctgaaaccattttatatgccacatcatttgcaaggcagcaccag |
23278833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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