View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12312_high_12 (Length: 238)
Name: NF12312_high_12
Description: NF12312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12312_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 201817 - 201939
Alignment:
| Q |
1 |
ttatttatataactatataagaatgttgggcttaatgattttttcaagagtcaaattcatctataattaatgttgtactaaacatactaacaatattttt |
100 |
Q |
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| T |
201817 |
ttatttatataactatataagaatgttgggcttaatgattttttcaagagtcaaattcttctataattaatgttgtactaaacatactaacaatattttt |
201916 |
T |
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| Q |
101 |
tcttcaatataaccaattaagtt |
123 |
Q |
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| T |
201917 |
tcttcaatataaccaattaagtt |
201939 |
T |
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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 201922 - 202012
Alignment:
| Q |
134 |
aatataaccaattaagttattagcaagagatgcatcatccattttatattcagaatctcttcttatgaaattggtccactacggccaaatt |
224 |
Q |
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| T |
201922 |
aatataaccaattaagttattagcaagagatgcatcatccattttatattcagaatctcttcttatgaaattggtccactacggccaaatt |
202012 |
T |
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