View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12312_high_2 (Length: 431)
Name: NF12312_high_2
Description: NF12312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12312_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 47 - 417
Target Start/End: Complemental strand, 40970670 - 40970288
Alignment:
| Q |
47 |
taaatgttaactttagcctatata--attatgttgaagtcctctaacatagttcataattatatttgttaatggacatacttgaattgaatacatattgt |
144 |
Q |
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| T |
40970670 |
taaatgttaactttagcctatatataattatgttgaagtcctctaacatagttcataattatatttgttaatggacatacttgaattgaatacatattgt |
40970571 |
T |
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| Q |
145 |
tttaaattgataaagacccacat-----acttaaaagacttaatacttgttcggtctcgtactgactt-aacatcaaagtttgtttacaagtatccttaa |
238 |
Q |
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| T |
40970570 |
tttagattgataaagacccatactcgacacttaaaagacttaatacttgttcggtctcgtactgactttaacatcaaagtttgtttaaaagtatccttaa |
40970471 |
T |
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| Q |
239 |
attcgtatctcgtcgattggtgttcaataaggcttaccatcataataatcacacatgtag--gtaggtcgctgaaacaaacaatagcaacaactgtctcg |
336 |
Q |
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| T |
40970470 |
attcgtatatcgacgattggtgttcaataaggc-taccatcataataatcacacatgtagatgtaggtcgctgaaacaaacaatagcaacaactgtctcg |
40970372 |
T |
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| Q |
337 |
tgctcagtgggc-------agagtattatattatagtgcaagtatgtctgtattaataatcttcactttaattaggggaaaagagcac |
417 |
Q |
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| T |
40970371 |
tgctcagtgggctgagtagtgagtattatattatagtgcaa----gtctgtattaataatcttcactttaattaggggaaaagagcac |
40970288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 40970760 - 40970731
Alignment:
| Q |
18 |
atgtgtgagctcaaaatacatactatgaat |
47 |
Q |
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| T |
40970760 |
atgtgtgagctcaaaatacatactatgaat |
40970731 |
T |
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