View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12312_high_5 (Length: 356)
Name: NF12312_high_5
Description: NF12312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12312_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 47 - 340
Target Start/End: Complemental strand, 40970670 - 40970369
Alignment:
| Q |
47 |
taaatgttaactttagcctatata--attatgttgaagtcctctaacatagttcataattatatttgttaatggacatacttgaattgaatacatattgt |
144 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40970670 |
taaatgttaactttagcctatatataattatgttgaagtcctctaacatagttcataattatatttgttaatggacatacttgaattgaatacatattgt |
40970571 |
T |
|
| Q |
145 |
tttaaattgataaagacccacat-----acttaaaagacttaatacttgttcggtctcgtactgactttaacatcaaagtttgtttacaagtatccttaa |
239 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40970570 |
tttagattgataaagacccatactcgacacttaaaagacttaatacttgttcggtctcgtactgactttaacatcaaagtttgtttaaaagtatccttaa |
40970471 |
T |
|
| Q |
240 |
attcgtatctcgtcgattggtgttcaataaggcttaccatcataataatcacacatgtag--gtaggtcgctgaaacaaacaatagcaacaactgtctcg |
337 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40970470 |
attcgtatatcgacgattggtgttcaataaggc-taccatcataataatcacacatgtagatgtaggtcgctgaaacaaacaatagcaacaactgtctcg |
40970372 |
T |
|
| Q |
338 |
tgc |
340 |
Q |
| |
|
||| |
|
|
| T |
40970371 |
tgc |
40970369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 40970760 - 40970731
Alignment:
| Q |
18 |
atgtgtgagctcaaaatacatactatgaat |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40970760 |
atgtgtgagctcaaaatacatactatgaat |
40970731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University