View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12312_low_11 (Length: 247)
Name: NF12312_low_11
Description: NF12312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12312_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 81 - 238
Target Start/End: Original strand, 46037466 - 46037623
Alignment:
| Q |
81 |
ttcaaaaaattggtcatcttgcaatttcaagcactctatgtttcattgatagtagggagtaagagaaaagaaataatgatatgcatttcaaaaaagttac |
180 |
Q |
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| T |
46037466 |
ttcaaaaaattggtcatcttgcaatttcaagcactctatgtttcagtgatagtagggagtaagagaaaagaaataatgatatgcatttcaaaaaagttac |
46037565 |
T |
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| Q |
181 |
aagttctgtaacataaattgcgctttttcgatacctaaaccttcacagttatacacag |
238 |
Q |
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| T |
46037566 |
aagttctgtaacataaattgcgctttttcgatacctaaaccttcacagttatacacag |
46037623 |
T |
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Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 46035123 - 46035210
Alignment:
| Q |
1 |
ttgatgttagtttattgcaatggtgggtacgagtaggggttgtttatttttatattggtttagtaatctatgaggctgccttcaaaaa |
88 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46035123 |
ttgatgttagtttattgcaatggtgggtacgagtagtggttgtttatttttatattggtttagtaatctatgaggctgccttcaaaaa |
46035210 |
T |
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