View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12312_low_14 (Length: 227)
Name: NF12312_low_14
Description: NF12312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12312_low_14 |
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| [»] scaffold0243 (1 HSPs) |
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| [»] scaffold1890 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 39867257 - 39867447
Alignment:
| Q |
20 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgttttcac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39867257 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgttgtgctcatattttgctgctatgatttaattcttatgcatattgttttcac |
39867356 |
T |
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| Q |
120 |
tatggccgatgcttttgttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctgt |
210 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||| |
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| T |
39867357 |
tatggccgaggcttttgttactgctgcttaattactttcacgttattgttccaaatccaaattaattgtcgttttatgctttaagttctgt |
39867447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 19243763 - 19243574
Alignment:
| Q |
20 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgttttcac |
119 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19243763 |
caattgtcttttatttcttttttaattcacattgcttctttcatattgttgtgcttatattttgctgctatgatttaattcttatgcatattgttttcac |
19243664 |
T |
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| Q |
120 |
tatggccgatgcttttgttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctgt |
210 |
Q |
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| T |
19243663 |
aatggtcgaggc-tttgttattgctgcttaattactttcacgttacggttccaaatccaaattaattgtcgttttatgctttatgttctgt |
19243574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0243 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 21581 - 21769
Alignment:
| Q |
20 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgttttcac |
119 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21581 |
caattgtcttttatttcttttttaattcaagttgcttctttcatgttgctgtgctcatattttgctgctatgatttaattcttatgcatattgttttcac |
21680 |
T |
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| Q |
120 |
tatggccgatgcttttgttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctg |
209 |
Q |
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|||| ||| || ||||||||||||||||||||||||||||||| | | |||||||| |||||||||| |||||||||||| |||||||| |
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| T |
21681 |
aatggtcgaggc-tttgttattgctgcttaattactttcacgttacggttccaaatccaaattaattgtcgttttatgcttgaagttctg |
21769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 22704740 - 22704934
Alignment:
| Q |
20 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcat----attgttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| | ||||| |
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| T |
22704740 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgttgtgctcatattttgctgttatgatttaattcttatgcatgcatactgttt |
22704839 |
T |
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| Q |
116 |
tcactatggccgatgcttttgttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctgt |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||| |
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| T |
22704840 |
tcactatggccgaggcttttgttattgctgcttaattactttcacgtttctgctccgaatacaaattaattgtcgttttatgctttaagttctgt |
22704934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1890 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold1890
Description:
Target: scaffold1890; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 247 - 151
Alignment:
| Q |
20 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgtttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
247 |
caattgtcttttatttcttttttaattcacgttgcttctttcatgttgttgtgctcatattttgctgctatgatttaattcttatgcatattgtttt |
151 |
T |
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