View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12312_low_8 (Length: 298)
Name: NF12312_low_8
Description: NF12312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12312_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 36892955 - 36892675
Alignment:
| Q |
1 |
ttatcaccacctaatgcctctgcttccaaatgcaatactgtatgctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgct |
100 |
Q |
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| T |
36892955 |
ttatcaccacctaatgcctcggctgccaaatgcaatactgtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgct |
36892856 |
T |
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| Q |
101 |
taatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttgg |
200 |
Q |
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| T |
36892855 |
taatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttgg |
36892756 |
T |
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| Q |
201 |
tatttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgat |
281 |
Q |
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| T |
36892755 |
tacttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgat |
36892675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 36881864 - 36881599
Alignment:
| Q |
8 |
cacctaatgcctctgcttccaaatgcaatactgtatgctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcat |
107 |
Q |
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| T |
36881864 |
cacctagtgcctttgctgccaaatgcaatattgtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcat |
36881765 |
T |
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| Q |
108 |
tctca------aggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggt |
201 |
Q |
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| T |
36881764 |
tctcattctcaatgtctcaacaataacgggttgtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttgga |
36881665 |
T |
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| Q |
202 |
atttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtc |
267 |
Q |
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| T |
36881664 |
attttgtctagaaattcgttaaccagttcaactattccatttttcgctgcaaccaaaaatggtgtc |
36881599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 265
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
135 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaact |
234 |
Q |
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|||||||| |||||||||||||||||||||| ||| |||||| |||| || | | |||| ||||| || ||||||||||| || ||||||||| | |
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| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
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| Q |
235 |
attccattttttgctgcaaccaaaaatggtg |
265 |
Q |
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| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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