View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12313_high_12 (Length: 312)

Name: NF12313_high_12
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12313_high_12
NF12313_high_12
[»] chr2 (15 HSPs)
chr2 (1-309)||(32032780-32033088)
chr2 (1-197)||(7700257-7700452)
chr2 (1-112)||(34190029-34190140)
chr2 (82-197)||(11562083-11562195)
chr2 (1-190)||(34878631-34878821)
chr2 (1-165)||(18703650-18703803)
chr2 (1-81)||(3357082-3357161)
chr2 (46-176)||(38417728-38417859)
chr2 (1-94)||(4075463-4075556)
chr2 (105-184)||(16639293-16639372)
chr2 (4-68)||(10498684-10498748)
chr2 (2-184)||(27447697-27447879)
chr2 (92-133)||(37623587-37623628)
chr2 (4-69)||(41009732-41009797)
chr2 (140-196)||(6141382-6141438)
[»] chr8 (21 HSPs)
chr8 (7-196)||(44873204-44873393)
chr8 (1-196)||(7681355-7681550)
chr8 (15-193)||(29866084-29866264)
chr8 (1-191)||(32161385-32161573)
chr8 (1-170)||(10381366-10381535)
chr8 (1-145)||(29841159-29841304)
chr8 (20-133)||(24556915-24557028)
chr8 (17-134)||(43421492-43421612)
chr8 (41-112)||(34696984-34697055)
chr8 (91-189)||(6978413-6978511)
chr8 (15-112)||(11993677-11993774)
chr8 (1-94)||(45486194-45486287)
chr8 (1-85)||(6802752-6802836)
chr8 (135-197)||(34697087-34697149)
chr8 (7-71)||(31235847-31235911)
chr8 (59-111)||(35990862-35990914)
chr8 (1-133)||(2148366-2148498)
chr8 (1-133)||(7388120-7388253)
chr8 (1-85)||(43421639-43421722)
chr8 (28-94)||(11463188-11463254)
chr8 (131-191)||(11995259-11995319)
[»] chr3 (26 HSPs)
chr3 (1-190)||(24309801-24309990)
chr3 (1-196)||(36475386-36475581)
chr3 (8-196)||(26285820-26286011)
chr3 (1-192)||(23778178-23778374)
chr3 (1-196)||(7856415-7856613)
chr3 (1-104)||(38572987-38573090)
chr3 (82-194)||(25032174-25032286)
chr3 (14-112)||(52308856-52308954)
chr3 (1-191)||(30136508-30136696)
chr3 (1-191)||(30142637-30142825)
chr3 (1-191)||(30146059-30146247)
chr3 (38-134)||(36478212-36478308)
chr3 (39-133)||(395924-396019)
chr3 (4-71)||(36478039-36478106)
chr3 (1-94)||(25070710-25070803)
chr3 (1-94)||(36617776-36617869)
chr3 (4-71)||(4137265-4137332)
chr3 (1-94)||(26903171-26903264)
chr3 (1-67)||(25735219-25735285)
chr3 (17-73)||(35502475-35502531)
chr3 (46-133)||(6714405-6714492)
chr3 (117-195)||(19832034-19832112)
chr3 (1-67)||(25203057-25203123)
chr3 (31-88)||(23794964-23795021)
chr3 (4-69)||(49907008-49907073)
chr3 (274-307)||(51663767-51663800)
[»] chr5 (18 HSPs)
chr5 (4-197)||(36744854-36745048)
chr5 (4-188)||(43144488-43144674)
chr5 (1-196)||(26459611-26459804)
chr5 (1-173)||(34751069-34751241)
chr5 (17-171)||(5568956-5569111)
chr5 (1-112)||(7607253-7607364)
chr5 (39-165)||(33824763-33824890)
chr5 (4-195)||(5069761-5069956)
chr5 (17-193)||(25818997-25819175)
chr5 (107-196)||(22536877-22536966)
chr5 (82-196)||(36633907-36634023)
chr5 (54-133)||(39509140-39509220)
chr5 (11-69)||(32868374-32868432)
chr5 (131-196)||(7607392-7607457)
chr5 (102-162)||(980242-980302)
chr5 (1-94)||(17076611-17076706)
chr5 (1-69)||(29670020-29670088)
chr5 (4-69)||(18475959-18476024)
[»] chr4 (17 HSPs)
chr4 (4-145)||(2158600-2158741)
chr4 (39-196)||(4377155-4377312)
chr4 (39-194)||(36247748-36247904)
chr4 (1-194)||(2813910-2814103)
chr4 (39-196)||(33517948-33518106)
chr4 (1-131)||(1111982-1112113)
chr4 (4-74)||(33518114-33518184)
chr4 (82-134)||(50723219-50723271)
chr4 (62-184)||(52849789-52849903)
chr4 (5-73)||(36247913-36247980)
chr4 (1-74)||(25023224-25023296)
chr4 (4-71)||(13216541-13216608)
chr4 (117-196)||(51070315-51070394)
chr4 (15-60)||(4377333-4377378)
chr4 (92-133)||(30804383-30804424)
chr4 (92-133)||(46671920-46671961)
chr4 (4-68)||(53840462-53840526)
[»] chr1 (17 HSPs)
chr1 (1-146)||(8064949-8065094)
chr1 (1-196)||(27464250-27464445)
chr1 (1-144)||(9539605-9539748)
chr1 (39-151)||(10781247-10781359)
chr1 (95-176)||(23347795-23347876)
chr1 (4-73)||(10781165-10781234)
chr1 (104-165)||(34912305-34912366)
chr1 (1-94)||(1017004-1017097)
chr1 (1-69)||(23353434-23353502)
chr1 (1-68)||(34912362-34912428)
chr1 (117-196)||(43909373-43909452)
chr1 (117-194)||(9516763-9516840)
chr1 (128-196)||(9539762-9539830)
chr1 (39-128)||(1405936-1406026)
chr1 (4-73)||(14230102-14230171)
chr1 (92-133)||(29703075-29703116)
chr1 (117-193)||(281144-281219)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-156)||(461319-461474)
[»] chr7 (28 HSPs)
chr7 (1-195)||(33941628-33941814)
chr7 (1-167)||(30074620-30074788)
chr7 (4-149)||(46090190-46090335)
chr7 (2-131)||(2945388-2945519)
chr7 (39-196)||(32221865-32222025)
chr7 (3-145)||(25232916-25233059)
chr7 (1-112)||(24658426-24658536)
chr7 (1-134)||(27080399-27080529)
chr7 (1-134)||(27197772-27197902)
chr7 (19-128)||(39785484-39785594)
chr7 (39-162)||(34346837-34346960)
chr7 (1-112)||(38300370-38300481)
chr7 (1-99)||(1691663-1691761)
chr7 (104-174)||(49143946-49144016)
chr7 (46-130)||(26824474-26824559)
chr7 (1-94)||(39780997-39781090)
chr7 (1-94)||(43265933-43266026)
chr7 (3-134)||(36906243-36906370)
chr7 (117-196)||(7899403-7899482)
chr7 (62-131)||(16841044-16841114)
chr7 (1-134)||(26787257-26787391)
chr7 (117-194)||(26050085-26050162)
chr7 (3-103)||(40716907-40717008)
chr7 (123-196)||(2945846-2945916)
chr7 (1-72)||(10512044-10512115)
chr7 (7-69)||(6051154-6051216)
chr7 (117-190)||(26059448-26059521)
chr7 (92-133)||(33255023-33255064)
[»] chr6 (17 HSPs)
chr6 (24-165)||(16461644-16461785)
chr6 (4-149)||(6689174-6689316)
chr6 (82-188)||(2919958-2920062)
chr6 (1-112)||(21883260-21883371)
chr6 (10-133)||(30702677-30702801)
chr6 (23-114)||(14607776-14607867)
chr6 (17-191)||(1975260-1975435)
chr6 (1-88)||(24901708-24901795)
chr6 (1-94)||(18816933-18817026)
chr6 (9-133)||(30705275-30705394)
chr6 (25-112)||(33704117-33704205)
chr6 (48-121)||(8150815-8150889)
chr6 (61-106)||(35188058-35188103)
chr6 (4-51)||(14430033-14430080)
chr6 (140-195)||(14607871-14607926)
chr6 (96-134)||(19267059-19267097)
chr6 (139-197)||(35187957-35188015)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-134)||(835-964)
[»] scaffold0684 (1 HSPs)
scaffold0684 (4-60)||(4160-4216)
[»] scaffold0163 (1 HSPs)
scaffold0163 (4-60)||(3902-3958)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 32033088 - 32032780
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32033088 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 32032989  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccctaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32032988 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaaatttagcctcacatgtaccaaaagtctggatccgcccctaacg 32032889  T
Q  201 ggaatacatagtgaaaaataaaccaggtaaacctgccctaatctatctaaatagacaatcactctccacgagtgcaacccagcgaacccgtgtacgggcg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32032888 ggaatacatagtgaaaaataaaccaggtaaacctgccctaatctatctaaatagacaatcactctccacgagtgcaacccagcgaacccgtgtacgggcg 32032789  T
Q  301 agaaaccag 309  Q
    |||||||||    
T  32032788 agaaaccag 32032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 7700452 - 7700257
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||| |||| ||| ||| | || ||||||||||  |||||||||    
T  7700452 acttatatagaaaga-atgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaatatgagatgattttcattgcaatgtattg 7700354  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgccccta 197  Q
    ||||||||||||||||||||||||||| |||||| ||  |||||||||| ||| ||| ||||||| ||||| || |||| || | ||||||||||||    
T  7700353 tatcaaacaatgttatttcttattttttatatagtttacattattgtttctttgaaattttagccacacatatatcaaatgtgtagatccgccccta 7700257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34190140 - 34190029
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||||||||||| ||||||||||| | |||| ||||||||  ||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  34190140 acttatatagaaagagatgttctattaacaattagcaatgatatcattttagttcattttcaacaaatggataggagacgattttcattgtaatgtattg 34190041  T
Q  101 tatcaaacaatg 112  Q
    ||||||||||||    
T  34190040 tatcaaacaatg 34190029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 11562195 - 11562083
Alignment:
Q  82 ttttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaag 181  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||   || |||||||||| ||| ||| | |||||||||||||| ||||||    
T  11562195 ttttcgttgtaatgtactgtatcaaacaatgttatttcttatttttaatata---tgcattattgtttctttgaaaatctagcctcacatgtatcaaaag 11562099  T
Q  182 tctggatccgccccta 197  Q
    ||||||||||||||||    
T  11562098 tctggatccgccccta 11562083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 34878631 - 34878821
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||| | ||||||||||||||||||  | ||| ||| |||||||||||||| |||||||| ||| |  |  ||||  ||| ||||  ||||    
T  34878631 acttatatagaaatatatgttcttttaacaattaacaatgacgtctttttaactcattttcaacaaatgaatatgaaagaatttatattgtaattcattg 34878730  T
Q  101 tatcaaac-aatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatcc 190  Q
    |||||||| ||| |||||||||||||||| |||||  |  |||||||||| ||||||| ||||||| || || ||||||| |||| |||||    
T  34878731 tatcaaacaaatcttatttcttatttttagtatagtcttcattattgtttctttaaaattttagccccatatataccaaatgtctagatcc 34878821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 18703650 - 18703803
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    |||||| |||||||||||||||||||||||||||| | || | | |||||  ||||||||||||||||||||||| ||| ||||||||| ||    ||||    
T  18703650 acttatttagaaagagatgttcttttaacaattagcaatgtttttatttttgctcatttttaacaaatggataggagacaattttcattgta----attg 18703745  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcc 165  Q
     |||||||||||       ||||||||||||||| ||| |||||||||| ||| ||| |||||||    
T  18703746 catcaaacaatg-------ttatttttaatatagtttgcattattgtttctttgaaattttagcc 18703803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3357082 - 3357161
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacga 81  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||||| |||||||||||||| |||||    
T  3357082 acttatatagaaagagatgtt-ttttaacaattagcaatgatgtcattttatctcattttcaacaaatggataggagacga 3357161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 38417859 - 38417728
Alignment:
Q  46 attttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgttatttcttatttttaatataggttgtattat 144  Q
    ||||||| ||||||| |||||||||||||| ||| ||||||| | |||| |||||| ||||| ||| ||||||||||||||||||||||| ||| ||||     
T  38417859 attttaaatcattttcaacaaatggataggagacaattttcactgtaattgtattgcatcaaccaaagttatttcttatttttaatatagcttgcattag 38417760  T
Q  145 tgtttatttaaaagtttagcctcacatgtacc 176  Q
    | ||| ||||||| ||||| | ||||| ||||    
T  38417759 tttttctttaaaattttaggcacacatatacc 38417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4075556 - 4075463
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||| ||| || |||||||| ||||||| ||| |  ||||||||||||| ||||    
T  4075556 acttttattgaaagagatgttcttttcacaattagtactgatgttattctagctcattttcaacaaattgatggcagacgattttcattgtaat 4075463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 16639293 - 16639372
Alignment:
Q  105 aaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtct 184  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||| |  |||| ||||||| ||||    
T  16639293 aaacaatgtaatttcttatttttaatatagtttgtattattgtttctttaaaattttagtcatacatataccaaatgtct 16639372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 10498684 - 10498748
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaat 68  Q
    |||||||||||||||||||||  ||||||||||| |||| | ||||||  ||||||| |||||||    
T  10498684 tatatagaaagagatgttcttagaacaattagtaatgatataattttagttcattttcaacaaat 10498748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 27447697 - 27447879
Alignment:
Q  2 cttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattg 100  Q
    |||||||||| ||| |||||||||||| ||||||   |  ||| |||||| ||| |||  || |||| |||| | ||| ||||||||| |||| |||||     
T  27447697 cttatatagagagaaatgttcttttaa-aattagctatattgttattttagctcgtttccaataaatagatatgagacaattttcattgtaattgtatta 27447795  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtct 184  Q
     |||||||||| ||||||||||||||||| |||   || |||||| ||| ||| ||| ||||||| ||||| || |||| ||||    
T  27447796 catcaaacaatattatttcttatttttaacataatctgcattattttttctttgaaattttagccacacatatatcaaatgtct 27447879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 37623587 - 37623628
Alignment:
Q  92 aatgtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||    
T  37623587 aatgtattgaatcaaacaatgttatttattatttttagtata 37623628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 41009732 - 41009797
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 69  Q
    |||||||||||||||||||||  |||||| || | |||||| ||||| ||||| ||| ||||||||    
T  41009732 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 41009797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 6141438 - 6141382
Alignment:
Q  140 attattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||| ||||||| ||| ||||||  |||||||||| |||||||||||| ||||||    
T  6141438 attattatttatttgaaattttagctccacatgtacctaaagtctggatctgcccct 6141382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 44873393 - 44873204
Alignment:
Q  7 atagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaa 106  Q
    ||||||| ||||||||||||||||||||| | | |||| ||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||||||||    
T  44873393 atagaaaaagatgttcttttaacaattagcaatcatgttattttaactcattttcaacaaatggatagaagacgattttcattgtaatgtattgtatcaa 44873294  T
Q  107 acaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    ||||| |||||||||||||||||||||| ||| |||||||||| ||||||| ||||||  | |||||||| |||||||| ||||||||||    
T  44873293 acaatattatttcttatttttaatatagtttgcattattgtttctttaaaattttagctccgcatgtacctaaagtctgaatccgcccct 44873204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 7681355 - 7681550
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||   |||||| ||||||||||||||  |||||||||||| |||| |||||    
T  7681355 acttatatagaaagatatgttcttttaacaattagcaatgatgtcattttagaacattttcaacaaatggataggaaacgattttcattgtaatatattg 7681454  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    ||||||||||||||||||||| |||||||||||| |||||||||| ||| ||| ||| |||| || ||||| ||||||| |||| |||||||||||    
T  7681455 tatcaaacaatgttatttcttgtttttaatatagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccgcccct 7681550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 29866264 - 29866084
Alignment:
Q  15 agatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacga--ttttcattctaatgtattgtatcaaacaatg 112  Q
    |||||||||||||| ||||| || ||||||||||||| |||||||| ||||||||||| || || ||  |||||||| |||||||||||||||||||||     
T  29866264 agatgttcttttaaaaattaataatgatgtcattttagctcattttcaacaaatggatcggagatgaaattttcattgtaatgtattgtatcaaacaata 29866165  T
Q  113 ttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcc 193  Q
    ||||||||||||| |||||||| ||| |||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  29866164 ttatttcttatttataatatagtttgcattattttttctttaaaagtttagccccacatataccaaaagtctggatccgcc 29866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 32161385 - 32161573
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    |||| |||| |||||||||||||||||||| |||||| |||||| |||||| |||||||| ||||||  |||| | |||||||||  || ||||||||||    
T  32161385 acttgtataaaaagagatgttcttttaacatttagtattgatgttattttatctcattttcaacaaa--gatatgagacgattttagttataatgtattg 32161482  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccg 191  Q
    |||||||||||||||||||||||||||||||||  ||| |||||| ||| |  |||| ||||||| |||||||| |||| |||| ||||||    
T  32161483 tatcaaacaatgttatttcttatttttaatataatttgcattattttttctccaaaattttagccccacatgtatcaaatgtctagatccg 32161573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 10381535 - 10381366
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||| ||||||| ||||||||||||  | |||||||||||||  ||||||| ||||||| |||| | ||| ||||| ||| |||||||||     
T  10381535 acttatatataaacagatgttattttaacaattaacaatgatgtcattttagttcattttcaacaaatagataagagacaattttgattgtaatgtatta 10381436  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcaca 170  Q
    ||||||||||||||| |||||||||||||||||| ||  |||||||||| ||| ||| ||||||||||||    
T  10381435 tatcaaacaatgttacttcttatttttaatatagtttacattattgtttctttgaaattttagcctcaca 10381366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 29841159 - 29841304
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtatt 99  Q
    ||||||||||||||| |||||||||||| |||||| || | ||| |||||||| |||||| ||||||| |||| | ||| ||||||||| ||| | ||||    
T  29841159 acttatatagaaagatatgttcttttaaaaattagcaccgttgttattttaacccattttcaacaaatagatatgagacaattttcattataattatatt 29841258  T
Q  100 gtatcaaacaatgttatttcttatttttaatataggttgtattatt 145  Q
     ||||||||||||||||||||||||||| |||||| ||| ||||||    
T  29841259 atatcaaacaatgttatttcttattttttatatagtttgcattatt 29841304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 24556915 - 24557028
Alignment:
Q  20 ttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttc 119  Q
    |||||||||||||||| | | ||| || ||||  ||||||| |||||||||||||    ||||||||||| ||||||||||||||||||||||||||||     
T  24556915 ttcttttaacaattagcaataatgacaatttacttcattttcaacaaatggatagaaatcgattttcattgtaatgtattgtatcaaacaatgttattta 24557014  T
Q  120 ttatttttaatata 133  Q
    ||||||||||||||    
T  24557015 ttatttttaatata 24557028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 43421612 - 43421492
Alignment:
Q  17 atgttcttttaacaattag--tactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgt 113  Q
    |||||||||||||||||||  || || ||| ||||||  ||||||| ||||||| |||||  ||||||||| ||| |||| |||||| ||||||||||||    
T  43421612 atgttcttttaacaattagagtaatgttgtaattttagttcattttcaacaaatagatagaagacgatttttattgtaattgtattgcatcaaacaatgt 43421513  T
Q  114 tatttcttatttttaatatag 134  Q
    |||| ||||||||||||||||    
T  43421512 tattacttatttttaatatag 43421492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 34696984 - 34697055
Alignment:
Q  41 atgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatg 112  Q
    ||||||||||| |||||||| |||||||||||| | ||||||||||||| |||| |||||||||||||||||    
T  34696984 atgtcattttatctcattttcaacaaatggatatgagacgattttcattgtaatatattgtatcaaacaatg 34697055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 6978413 - 6978511
Alignment:
Q  91 taatgtattgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatc 189  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| ||  |||| ||||| ||| ||| ||||||| ||||| || |||||| |||||||    
T  6978413 taatgtattatatcaaacaatattatttcttatttttaatatagtttacattactgtttctttgaaaatttagccccacatatatcaaaagactggatc 6978511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 11993677 - 11993774
Alignment:
Q  15 agatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatg 112  Q
    |||||| || ||||||||||  | ||||||||||||| |||||||| |||||||| ||||| || || ||||||| ||||||| ||||||||||||||    
T  11993677 agatgtcctattaacaattaacaatgatgtcattttagctcattttcaacaaatgtataggagatgactttcattgtaatgtagtgtatcaaacaatg 11993774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 45486194 - 45486287
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||||| ||||||||||| |  ||||||||||||| ||||    
T  45486194 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 45486287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6802752 - 6802836
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgatttt 85  Q
    ||||||||| ||||||||||| ||||||||||||| | ||| |||||||||  |||||||||||||||| ||||| ||| |||||    
T  6802752 acttatataaaaagagatgttattttaacaattagcaatgaagtcattttacttcatttttaacaaatgaataggagacaatttt 6802836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 34697087 - 34697149
Alignment:
Q  135 gttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgccccta 197  Q
    |||||| |||| ||||||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  34697087 gttgtactattatttatttaaaattttagctccacatgtacctaaagtctggatccgccccta 34697149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 31235847 - 31235911
Alignment:
Q  7 atagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatgga 71  Q
    ||||| ||||||||||||  ||||||||||| |||||| |||||| |||||||| ||||||||||    
T  31235847 atagagagagatgttcttgaaacaattagtaatgatgtaattttagctcattttcaacaaatgga 31235911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 35990862 - 35990914
Alignment:
Q  59 tttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaat 111  Q
    |||||||||| |||||| ||||||||||||| | |||||||||||||||||||    
T  35990862 tttaacaaatagataggagacgattttcattgttatgtattgtatcaaacaat 35990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2148498 - 2148366
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtatt 99  Q
    ||||||||||||| ||  |||||||||| |||||| | |||||  ||||||  || |||| |||||||| |||   ||  ||||||||| |||| |||||    
T  2148498 acttatatagaaa-aggcgttcttttaaaaattagcaatgatgctattttagttcgttttcaacaaatgtataatagattattttcattgtaattgtatt 2148400  T
Q  100 gtatcaaacaatgttatttcttatttttaatata 133  Q
    | ||||| ||||||||||||||||||||| ||||    
T  2148399 gcatcaatcaatgttatttcttatttttagtata 2148366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 7388120 - 7388253
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtatt 99  Q
    ||||||||||||| | ||||| |||||| |||||| | || | | |||||| | | |||| ||||| |||| ||  ||| ||||| ||| |||| |||||    
T  7388120 acttatatagaaataaatgtttttttaaaaattagcaatgtttttattttagcacgttttcaacaattggaaagaagacaatttttattgtaattgtatt 7388219  T
Q  100 gtatcaaacaatgttatttcttatttttaatata 133  Q
      |||||||||||||| |||||||||||||||||    
T  7388220 acatcaaacaatgttaattcttatttttaatata 7388253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43421722 - 43421639
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgatttt 85  Q
    ||||||||| ||||  || ||||||||||||| |||| |  ||||||||||  ||||||| |||||||||||||| |||||||||    
T  43421722 acttatataaaaagtaatattcttttaacaatcagtaatattgtcattttagttcatttt-aacaaatggataggagacgatttt 43421639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 11463254 - 11463188
Alignment:
Q  28 acaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||||||| |||||||| ||| || |||||||| ||||||||||| |  ||||||||||||| ||||    
T  11463254 acaattagcactgatgttattctagctcattttcaacaaatggatggtagacgattttcattgtaat 11463188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 11995259 - 11995319
Alignment:
Q  131 ataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccg 191  Q
    |||| |||||||||| ||||||||||| ||||||  ||||| |||| ||||| ||||||||    
T  11995259 atagtttgtattattatttatttaaaattttagctccacatatacctaaagtttggatccg 11995319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 24309990 - 24309801
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||| ||||||||||||||||||||||||||||  | |||||| ||||| ||| ||||| |||||||||||||| ||||||||||||| ||||||||||    
T  24309990 acttacatagaaagagatgttcttttaacaattaacaatgatgtgattttgacttattttcaacaaatggataggagacgattttcattgtaatgtattg 24309891  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatcc 190  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||||| ||| ||| |||||| || |||||||| |||||||||||||    
T  24309890 tatcaaacaatattatttcttatttttaatatagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 36475581 - 36475386
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||||  ||||||||||||||||| || || ||||||||||||| || |||||||    
T  36475581 acttatataaaaagagatgttcttttaacaattagcaatgatgtcattttcgctcatttttaacaaatgaatgggagacgattttcattgtagtgtattg 36475482  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||| ||| ||| |||| || ||||| |||||||| ||| |||||| ||||    
T  36475481 tatcaaacaatgttatttcttatttttaatatagtttgcgttattgtttctttgaaattttaaccccacatataccaaaaatctagatccgtccct 36475386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 26285820 - 26286011
Alignment:
Q  8 tagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaa 107  Q
    |||||||| ||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||    
T  26285820 tagaaagatatgttcttttaacaattagcaatgatgtccttttaactcattttcaacaaatggataggaaacgattttcattgtaatgtattgtatcaaa 26285919  T
Q  108 caatgttatttcttatttttaatataggttgtattattg---tttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    ||||||||||||||||||||||||||| ||| |||||||   ||| ||| ||| || |||| ||||| || | |||||||||||||||||||    
T  26285920 caatgttatttcttatttttaatatagtttgcattattgctatttttttgaaatttaagccccacatatatctaaagtctggatccgcccct 26286011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 23778374 - 23778178
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcat-----tctaatg 95  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||||| | ||| ||||| ||     | |||||    
T  23778374 acttatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggataagagaccatttttattgtaatgtaatg 23778275  T
Q  96 tattgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgc 192  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||| |||| | ||| || || |||||||||||||||||    
T  23778274 tattgtatcaaacaatgttatttcttatttttaatatagtttgtattattttttctttgaaaatttaacttcaaatatatcaaaagtctggatccgc 23778178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7856613 - 7856415
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||||||||||||||||||||||  | ||| ||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  7856613 acttatatagaaagagatgttcttttaacaattaacaatgacgtcattttagctcatttttaacaaatggataggagacgatttttattataatgtattg 7856514  T
Q  101 tatcaaacaatgttat--ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcaca-tgtaccaaaagtctggatccgcccct 196  Q
    ||||||||||| || |  || ||||||||||||||  ||| |||||||||| ||| ||| ||||||  || | | |||| |||||| ||||||||||||    
T  7856513 tatcaaacaatatttttatttttatttttaatataatttgcattattgtttctttgaaattttagctccaaattatacctaaagtccggatccgcccct 7856415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38573090 - 38572987
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||||||||||| ||||||||||| | || |||||||||| |||||||| |||||||||||||| ||||||||||||| ||||| ||||    
T  38573090 acttatatagaaagagatgttctattaacaattagcaatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgtaatgcattg 38572991  T
Q  101 tatc 104  Q
    ||||    
T  38572990 tatc 38572987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 25032174 - 25032286
Alignment:
Q  82 ttttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaag 181  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||| |||||||||  ||| ||| ||||||| |||||||| ||||||    
T  25032174 ttttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatgtaatttgcattattgttcctttgaaaatttagccccacatgtatcaaaag 25032273  T
Q  182 tctggatccgccc 194  Q
    ||| |||||||||    
T  25032274 tctagatccgccc 25032286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 52308856 - 52308954
Alignment:
Q  14 gagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatg 112  Q
    |||||||||| ||||||||||  | ||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||| ||||||||||||||    
T  52308856 gagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggataggagatgattttcattgtaatgtagtgtatcaaacaatg 52308954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 30136696 - 30136508
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtatt 99  Q
    ||||||||||||||| |||||||||||| ||||||    |  || |||||  | |||||| |||||||||||||| ||| |||||||||  ||| |||||    
T  30136696 acttatatagaaagaaatgttcttttaaaaattagcggcgccgttatttt--cgcattttcaacaaatggataggagaccattttcattgaaattgtatt 30136599  T
Q  100 gtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccg 191  Q
    |||||||||||||||||||||||||||| |||| | ||| |||||| ||| ||||||| ||||| | ||||| |||| || |||| ||||||    
T  30136598 gtatcaaacaatgttatttcttatttttcatattgtttgcattatt-tttttttaaaattttagtcacacatataccgaatgtctagatccg 30136508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 30142825 - 30142637
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtatt 99  Q
    ||||||||||||||| |||||||||||| ||||||    |  || |||||  | |||||| |||||||||||||| ||| |||||||||  ||| |||||    
T  30142825 acttatatagaaagaaatgttcttttaaaaattagcggcgccgttatttt--cgcattttcaacaaatggataggagaccattttcattgaaattgtatt 30142728  T
Q  100 gtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccg 191  Q
    |||||||||||||||||||||||||||| |||| | ||| |||||| ||| ||||||| ||||| | ||||| |||| || |||| ||||||    
T  30142727 gtatcaaacaatgttatttcttatttttcatattgtttgcattatt-tttttttaaaattttagtcacacatataccgaatgtctagatccg 30142637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 30146247 - 30146059
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtatt 99  Q
    ||||||||||||||| |||||||||||| ||||||    |  || |||||  | |||||| |||||||||||||| ||| |||||||||  ||| |||||    
T  30146247 acttatatagaaagaaatgttcttttaaaaattagcggcgccgttatttt--cgcattttcaacaaatggataggagaccattttcattgaaattgtatt 30146150  T
Q  100 gtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccg 191  Q
    |||||||||||||||||||||||||||| |||| | ||| |||||| ||| ||||||| ||||| | ||||| |||| || |||| ||||||    
T  30146149 gtatcaaacaatgttatttcttatttttcatattgtttgcattatt-tttttttaaaattttagtcacacatataccgaatgtctagatccg 30146059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 36478212 - 36478308
Alignment:
Q  38 ctgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatatag 134  Q
    ||||||||||||||||||||||| |||||||||||    ||| ||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  36478212 ctgatgtcattttaactcattttcaacaaatggatcaaagacaattttaattgtaacgtattgtatcaaacaatattatttcttatttttaatatag 36478308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 395924 - 396019
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    |||||| |||||| |||||||| ||||||||||| |  ||| ||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||    
T  395924 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtata 396019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 36478039 - 36478106
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatgga 71  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| || |||||||    
T  36478039 tatatagaaaaagatgttcttttaacaattagtaatgatgtcattttagctcattttcaagaaatgga 36478106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25070710 - 25070803
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||||| ||||||||||| |  ||||||||||||| ||||    
T  25070710 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 25070803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 36617776 - 36617869
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||||| ||||||||||| |  ||||||||||||| ||||    
T  36617776 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 36617869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 4137265 - 4137332
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatgga 71  Q
    ||||||| |||||||||||||  |||||||||||  ||||||||||||||||||||| ||||||||||    
T  4137265 tatatagtaagagatgttcttagaacaattagtaacgatgtcattttaactcattttcaacaaatgga 4137332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 26903264 - 26903171
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||||| |||||||||||    ||||||||||||| ||||    
T  26903264 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatgacagacgattttcattgtaat 26903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25735285 - 25735219
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaa 67  Q
    ||||||||||||||||||||||||| || |||||||| |||| | ||||||| ||||||| ||||||    
T  25735285 acttatatagaaagagatgttctttgaataattagtaatgatataattttaattcattttcaacaaa 25735219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 35502475 - 35502531
Alignment:
Q  17 atgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggata 73  Q
    |||||||||||| |||||| | || ||| ||||||||||||||||||||||||||||    
T  35502475 atgttcttttaaaaattagcaatgctgttattttaactcatttttaacaaatggata 35502531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 6714405 - 6714492
Alignment:
Q  46 attttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    ||||||| ||||||| ||||||| |||| | ||| ||||||||| |||| |||||  |||||| | |||||||||||||||||||||||    
T  6714405 attttaattcattttcaacaaatagatatgagacaattttcattgtaattgtattacatcaaata-tgttatttcttatttttaatata 6714492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 19832034 - 19832112
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccc 195  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||||||||| | | |  || |||||||||||||||    
T  19832034 ttcttatttttaatataatttgcattattgtttcttcaaaattttagcctcacttatccttaatgtctggatccgcccc 19832112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25203057 - 25203123
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaa 67  Q
    ||||||||||||||||||||||||  || |||||||| |||| | ||||||  ||||||| ||||||    
T  25203057 acttatatagaaagagatgttcttagaataattagtaatgatataattttagttcattttcaacaaa 25203123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 23795021 - 23794964
Alignment:
Q  31 attagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcat 88  Q
    ||||||| | ||||| ||||| |||||||| |||||||||||| | ||||||||||||    
T  23795021 attagtaataatgtctttttagctcattttcaacaaatggataagagacgattttcat 23794964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 49907008 - 49907073
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 69  Q
    |||||||||||||||||||||  ||||||||||| |||| | ||||||  |||||||  |||||||    
T  49907008 tatatagaaagagatgttcttagaacaattagtaatgatataattttatttcattttctacaaatg 49907073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 51663767 - 51663800
Alignment:
Q  274 gcaacccagcgaacccgtgtacgggcgagaaacc 307  Q
    ||||||||||||||||| ||||||||||||||||    
T  51663767 gcaacccagcgaacccgcgtacgggcgagaaacc 51663800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 36745048 - 36744854
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtat 103  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||   ||||||||| ||| |||| ||||||||    
T  36745048 tatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggatataagacgattttaattgtaatttattgtat 36744949  T
Q  104 caaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaa-gtttagcctcacatgtaccaaaagtctggatccgccccta 197  Q
    |||||||| |||||||||| ||||||||||| ||| |||||||||| |||||||  ||||||  |||||||||| |||||||| ||||| |||||    
T  36744948 caaacaatattatttcttacttttaatatagtttgcattattgtttctttaaaatttttagctccacatgtacctaaagtctgaatccgtcccta 36744854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 43144674 - 43144488
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacga--ttttcattctaatgtattgt 101  Q
    |||||||||| ||||||||||||||||||||  |  ||||||| |||| |||||||| ||||||||||| || || ||  |||||||| |||||||||||    
T  43144674 tatatagaaaaagatgttcttttaacaattaacaaagatgtcactttagctcattttcaacaaatggattggagaagaaattttcattgtaatgtattgt 43144575  T
Q  102 atcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggat 188  Q
    |||||||||||||||||||||||| |||||||| ||| || ||| ||| ||| ||||||||||| ||||| ||||||||||||||||    
T  43144574 atcaaacaatgttatttcttatttataatatagtttgcataattttttttttgaaagtttagccccacatataccaaaagtctggat 43144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 26459804 - 26459611
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| |||||||| ||| ||||||||||||||  | | |||||||| |||||||| ||||||||||||||  |||||||||||| ||||||||||    
T  26459804 acttatatataaagagatattcctttaacaattagta--gctctcattttagctcattttcaacaaatggataggacacgattttcattgtaatgtattg 26459707  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||||||| ||||||||||||||||| | ||| || ||||||| ||| ||| ||||||   ||||||||| ||||||| |||||| ||||    
T  26459706 tatcaaacaatgttctttcttatttttaatatggtttgcataattgtttctttgaaattttagctcaacatgtacctaaagtctcgatccgtccct 26459611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34751069 - 34751241
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||||||||||  ||||||||||||| | ||||||||||||| |||||||| ||||||| || | | || |||||||||| ||||||||||    
T  34751069 acttatatataaagagatgtaattttaacaattagcaatgatgtcattttagctcattttcaacaaatagacacgagatgattttcattttaatgtattg 34751168  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgt 173  Q
    ||||||||||||||| |||||||||||||||||  ||| |||||||||| ||| ||| ||||||| |||||||    
T  34751169 tatcaaacaatgttacttcttatttttaatataatttgcattattgtttctttgaaattttagccccacatgt 34751241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 5569111 - 5568956
Alignment:
Q  17 atgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgtta 115  Q
    |||||||||||| |||||| | || ||| ||||||||||||||| |||||||||||| | ||| ||||||||| |||| |||||| ||||| ||||||||    
T  5569111 atgttcttttaaaaattagcaatgttgttattttaactcattttcaacaaatggatacgagacaattttcattgtaattgtattgcatcaaccaatgtta 5569012  T
Q  116 tttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacat 171  Q
    ||||||||||||||||||| ||| |||||| ||| ||| ||| ||||||| |||||    
T  5569011 tttcttatttttaatatagtttgcattattttttcttttaaattttagccacacat 5568956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 7607253 - 7607364
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||||||||||| ||||||||||  | ||||||||||||| |||||||| |||||||||||||  ||||||||| ||| ||||||||||    
T  7607253 acttatatagaaagagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggatagaagacgatttttattgtaatgtattg 7607352  T
Q  101 tatcaaacaatg 112  Q
    ||||||||||||    
T  7607353 tatcaaacaatg 7607364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 33824763 - 33824890
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgttatttcttatttttaatataggtt 137  Q
    |||||| ||||||||||||||| |||||||| ||||| ||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||||  ||    
T  33824763 tgatgttattttaactcattttcaacaaatgaataggagacgattttcattgtaattgtactgcatcaaacaatgttatttcttatttttaatatatttt 33824862  T
Q  138 gtattattgtttatttaaaagtttagcc 165  Q
    | |||||||||| ||||||| |||||||    
T  33824863 gcattattgtttctttaaaattttagcc 33824890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 5069956 - 5069761
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtatt---- 99  Q
    |||||| ||||||||||| ||||||||||||  | |||| ||||||||||||||||| ||||||| || | | || |||||||||| ||| |||||        
T  5069956 tatatataaagagatgttattttaacaattaacaatgatatcattttaactcattttcaacaaatagacatgagatgattttcattgtaacgtattaatt 5069857  T
Q  100 gtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccc 195  Q
    |||||||||||| ||| |||||||||||||||||| ||  |||||||||| ||||||  ||| ||| ||||||||||||| |||| ||||| ||||    
T  5069856 gtatcaaacaatattacttcttatttttaatatagtttacattattgtttctttaaattttttgccccacatgtaccaaatgtctagatccacccc 5069761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 25819175 - 25818997
Alignment:
Q  17 atgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttat 116  Q
    |||||||||||||  |||||| | | || |||||| || ||||| |||||||||||||| ||| ||||||||  ||||||||||| ||||||||||||||    
T  25819175 atgttcttttaactgttagtaataaagttattttagcttattttcaacaaatggataggagacaattttcatcgtaatgtattgtttcaaacaatgttat 25819076  T
Q  117 ttcttatttttaatataggttgtat--tattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcc 193  Q
    ||| |||||||||||||| ||  ||  |||| ||| ||| ||| ||||||| ||||||||||||| |||| ||||||||    
T  25819075 ttcctatttttaatatagtttacattatattttttctttgaaattttagccccacatgtaccaaatgtctagatccgcc 25818997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 22536966 - 22536877
Alignment:
Q  107 acaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    ||||||||||||||| ||||||||| || ||| |||||||||| ||||||| ||||| | |||||||| |||||||||||||||| ||||    
T  22536966 acaatgttatttcttctttttaatacagtttgcattattgtttctttaaaaatttagtcccacatgtatcaaaagtctggatccgtccct 22536877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 36633907 - 36634023
Alignment:
Q  82 ttttcattctaatgtattgtatcaaacaatgttatttcttatttttaatata---ggttgtattattgtttatttaaaagtttagcctcacatgtaccaa 178  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||     ||||||||||| || ||| ||| ||||||| ||||| ||  ||    
T  36633907 ttttcattgtaatgtattgtatcaaacaatgttattacttatttttaatataattatttgtattattg-ttctttgaaaatttagccccacatatattaa 36634005  T
Q  179 aagtctggatccgcccct 196  Q
    ||||||||||||| ||||    
T  36634006 aagtctggatccgtccct 36634023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 39509220 - 39509140
Alignment:
Q  54 tcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    ||||||| ||||||| ||| |  ||| ||||||||| |||| |||||||||||||||||||||| |||||||||| |||||    
T  39509220 tcattttcaacaaattgatggaagacaattttcattgtaattgtattgtatcaaacaatgttatatcttatttttcatata 39509140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 32868432 - 32868374
Alignment:
Q  11 aaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 69  Q
    ||||||||||||||  |||||||| || |||||| ||||||| ||||||||||||||||    
T  32868432 aaagagatgttcttagaacaattattaatgatgtaattttaattcatttttaacaaatg 32868374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 7607392 - 7607457
Alignment:
Q  131 ataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||| |||||||||| ||||||| ||| ||||||  |||||||||| ||||||||||||| |||||    
T  7607392 atagtttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatccacccct 7607457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 980242 - 980302
Alignment:
Q  102 atcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagttta 162  Q
    ||||||||||||||||||||||||||||||||  ||| |||||| ||| || |||| ||||    
T  980242 atcaaacaatgttatttcttatttttaatataatttgcattattatttcttcaaaatttta 980302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 17076611 - 17076706
Alignment:
Q  1 acttatatagaaagagatgttctttta--acaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||||||| |||||||||||| ||||   |||||||| |||||||| ||| || |||||||| |||||||| || |  ||||||||||||| ||||    
T  17076611 acttatattgaaagagatgtttttttttcacaattagcactgatgttattctagctcattttcaacaaatgaatggtagacgattttcattgtaat 17076706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29670088 - 29670020
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 69  Q
    ||||||||||||| ||||||||||||||||||||  | | |||| |||||| || ||||| ||||||||    
T  29670088 acttatatagaaaaagatgttcttttaacaattatcaataatgttattttagcttattttcaacaaatg 29670020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 18475959 - 18476024
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 69  Q
    |||||||||||||||||||||  ||||||||||| | || | ||||||  ||||||| ||||||||    
T  18475959 tatatagaaagagatgttcttagaacaattagtaattatataattttagttcattttcaacaaatg 18476024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 2158741 - 2158600
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtat 103  Q
    ||||||||||||||| |||||||||||||||| | |||| | |||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  2158741 tatatagaaagagatcttcttttaacaattagcaatgatattattttagctcattttcaacaaatggataggagacgattttcattgtaatgtattgtat 2158642  T
Q  104 caaacaatgttatttcttatttttaatataggttgtattatt 145  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  2158641 caaacaatgttatttcttatttttaatatagtttgcattatt 2158600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 4377312 - 4377155
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttg 138  Q
    |||||||||||||||||||||| ||||||||||||   ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||    
T  4377312 tgatgtcattttaactcattttcaacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagtttg 4377213  T
Q  139 tattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
     |||||||||| ||| ||| | ||||  |||||||||| |||||||||||| ||||||    
T  4377212 cattattgtttctttgaaattatagctccacatgtacctaaagtctggatctgcccct 4377155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 36247904 - 36247748
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttat-ttttaatataggtt 137  Q
    ||||||||||||| |||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| | | ||||||| ||||||||||| ||    
T  36247904 tgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcaaacaatatgaattcttattttttaatatagttt 36247805  T
Q  138 gtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgccc 194  Q
    | |||||||||| ||||||| ||||||  |||||||||| |||||||||||||||||    
T  36247804 gcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 36247748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 2814103 - 2813910
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    |||| |||||||| | ||| | |||||||||| || | |||||| |||||| |||||||| |||||||||||| | ||||| ||||||| ||||||||||    
T  2814103 acttgtatagaaatatatgatgttttaacaataagcaatgatgttattttagctcattttcaacaaatggatatgagacgactttcattgtaatgtattg 2814004  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgccc 194  Q
    ||||||||||| ||||||| |||||||||||||| ||| |||||||||| ||| ||| ||||||  || || ||||||||||||| ||||||||    
T  2814003 tatcaaacaattttatttcatatttttaatatagtttgcattattgtttctttgaaattttagctccatatataccaaaagtctgaatccgccc 2813910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 33518106 - 33517948
Alignment:
Q  39 tgatgtcattttaactcattttta-acaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggtt 137  Q
    ||||||||||||| |||||||||  |||||||||||   ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||    
T  33518106 tgatgtcattttagctcatttttcgacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatataattt 33518007  T
Q  138 gtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||||| ||||||| |||| |  | ||| |||| || |||| |||||||||||    
T  33518006 gtattattgtttctttaaaattttaactccgcatatacctaatgtctagatccgcccct 33517948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1112113 - 1111982
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtatt 99  Q
    ||||||||||||| | ||||||||||||||||||  |  || || ||||||  ||||||| |||||||||||| | ||| ||||| ||| |||| ||||     
T  1112113 acttatatagaaatacatgttcttttaacaattaacaacgaggttattttagatcattttcaacaaatggataagagacaattttgattgtaattgtatc 1112014  T
Q  100 gtatcaaacaatgttatttcttatttttaata 131  Q
    | ||||||||||||||||||||||| ||||||    
T  1112013 gcatcaaacaatgttatttcttattattaata 1111982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 33518184 - 33518114
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggatag 74  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||| |||||||| |||| ||||||||    
T  33518184 tatatagaaatagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacagatggatag 33518114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 50723219 - 50723271
Alignment:
Q  82 ttttcattctaatgtattgtatcaaacaatgttatttcttatttttaatatag 134  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  50723219 ttttcattgtaatgtattatatcaaacaatgttatttcttatttttaatatag 50723271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 52849789 - 52849903
Alignment:
Q  62 aacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagttt 161  Q
    ||||||| ||||||  || ||||||||| |||| |||||||| |||||||        ||||||||||||||| |||||||||||||| ||||||| |||    
T  52849789 aacaaattgataggaaaccattttcattgtaatatattgtattaaacaat--------ttatttttaatatagtttgtattattgtttctttaaaatttt 52849880  T
Q  162 agcctcacatgtaccaaaagtct 184  Q
    ||||||| ||||| |||| ||||    
T  52849881 agcctcatatgtatcaaatgtct 52849903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 36247980 - 36247913
Alignment:
Q  5 atatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggata 73  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||| |||| ||| ||||||||||||    
T  36247980 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctca-tttcaacaaatggata 36247913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25023224 - 25023296
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggatag 74  Q
    ||||||||||||| ||||||||||||||||||||| | |||| | |||||| | |||||| ||||||| |||||    
T  25023224 acttatatagaaatagatgttcttttaacaattagcaatgat-ttattttagcgcattttaaacaaatagatag 25023296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 13216608 - 13216541
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatgga 71  Q
    |||||||||||||||||||||  ||||||||||| |||| | |||||   ||||||| ||||||||||    
T  13216608 tatatagaaagagatgttcttagaacaattagtaatgatatgattttgtttcattttcaacaaatgga 13216541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 51070394 - 51070315
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||||||||||| ||| | |||||||| || |||| |||| || ||||| ||| ||| || |||||||||||||    
T  51070394 ttcttatttttaatatagtttgcaatattgttttttcaaaattttaaccccacatatactaaatgtttggatccgcccct 51070315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 4377378 - 4377333
Alignment:
Q  15 agatgttcttttaacaattagtactgatgtcattttaactcatttt 60  Q
    ||||||||||| ||||||||| | ||||||||||||| ||||||||    
T  4377378 agatgttctttaaacaattagcaatgatgtcattttagctcatttt 4377333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 30804424 - 30804383
Alignment:
Q  92 aatgtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||    
T  30804424 aatgtattgaatcaaacaatgttatttattatttttagtata 30804383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 46671961 - 46671920
Alignment:
Q  92 aatgtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  46671961 aatgtattgaatcaaacaatattatttattatttttaatata 46671920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 53840462 - 53840526
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaat 68  Q
    |||||| ||||||||||||||  ||||||||||| |||| | ||||||  ||||||| |||||||    
T  53840462 tatatataaagagatgttcttaaaacaattagtaatgatataattttagttcattttcaacaaat 53840526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8065094 - 8064949
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||||  |||||| | ||| |||||||||| ||||||||||||| ||||||||||    
T  8065094 acttatataaaaagagatgttcttttaacaattagcaatgatgtcattttcgctcattctcaaccaatggataggagacgattttcattgtaatgtattg 8064995  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattg 146  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  8064994 tatcaaacaatgtaatttcttatttttaatatagtttgtattattg 8064949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27464250 - 27464445
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||| |||| |||||||||||||||  | ||| |||||||||  ||||||| ||||||| ||||   |||| |||| ||| | ||||||||    
T  27464250 acttatatagaaaaagatattcttttaacaattaacaatgacgtcattttagttcattttcaacaaatagataatagacggttttaattgtgatgtattg 27464349  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| ||| ||||||||||||||||||||| |||| ||||| |||||    
T  27464350 tatcaaacaacgttatttcttattttaaatatagtttgtattgttgtttatttgaaattttagcctcacatgtaccaaatgtctagatcctcccct 27464445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 9539605 - 9539748
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||||| ||| |||||||||||| || | |||| | |||||| |||||||| |||||||||||| | || |||||||||| ||||||||||    
T  9539605 acttatataaaaagatatgatcttttaacaataagcaatgatattattttagctcattttcaacaaatggataagagatgattttcattgtaatgtattg 9539704  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattat 144  Q
    |||||||| |||||||||| |||||||||||||| ||| |||||    
T  9539705 tatcaaacgatgttatttcatatttttaatatagtttgcattat 9539748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 10781247 - 10781359
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttg 138  Q
    ||||||||||||| | |||||| ||||||| ||||   ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||    
T  10781247 tgatgtcattttagcacattttcaacaaatagatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttatttttaatatagtttg 10781346  T
Q  139 tattattgtttat 151  Q
     ||| || |||||    
T  10781347 catttttttttat 10781359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 23347876 - 23347795
Alignment:
Q  95 gtattgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtacc 176  Q
    |||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||| ||||||| ||||| ||||    
T  23347876 gtattgcatcaaacaatgttatttcttatatttaatatagtttgcattattgtttatttgaaattttagccacacatatacc 23347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 10781165 - 10781234
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggata 73  Q
    |||||||||||| ||||||||||||||||||| |  ||| ||||||||||||||||| ||||||||||||    
T  10781165 tatatagaaagatatgttcttttaacaattagcaacgatttcattttaactcattttcaacaaatggata 10781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 34912366 - 34912305
Alignment:
Q  104 caaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcc 165  Q
    |||| ||| |||||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  34912366 caaataattttatttcttatttttaatatagcttgtattattgtttctttaaaattttagcc 34912305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1017004 - 1017097
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||| | ||||||||||| |  ||||||||| ||| ||||    
T  1017004 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattctcaacaaatggatggcagacgatttttattgtaat 1017097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23353502 - 23353434
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 69  Q
    ||||||||||||||| |||||||||||| | |||| | | |||| ||||||||||||||| ||||||||    
T  23353502 acttatatagaaagaaatgttcttttaatatttagcaattatgttattttaactcattttcaacaaatg 23353434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34912428 - 34912362
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaat 68  Q
    ||||||||||||| ||||||||||||||| ||||  | |||||||||||| || ||||||||||||||    
T  34912428 acttatatagaaatagatgttcttttaaccattaaaaatgatgtcatttt-acccatttttaacaaat 34912362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 43909373 - 43909452
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||| | ||||| ||| ||| ||||||||||||||||    
T  43909373 ttcttatttttaatataatttgcattattgtttcttcaaaattttagtcccacatatactaaatgtctggatccgcccct 43909452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 9516763 - 9516840
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgccc 194  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||||| || || ||| ||| ||||||||||||||    
T  9516763 ttcttatttttaatataatttgcattattgtttcttcaaaattttagccccatatatactaaatgtctggatccgccc 9516840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 9539762 - 9539830
Alignment:
Q  128 aatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    ||||||| ||| |||||||||| ||| ||| ||||  ||||||| ||| ||||||||||||||||||||    
T  9539762 aatatagtttgcattattgtttctttgaaattttaatctcacatatactaaaagtctggatccgcccct 9539830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 1406026 - 1405936
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgtatcaaacaatgttatttcttattttta 128  Q
    |||||| ||||||||||||||| | |||||||||||  || ||| |||||  ||| | |||||| ||||| |||||||||| |||||||||    
T  1406026 tgatgttattttaactcattttcatcaaatggatagaagaagatattcatcataattatattgtgtcaaataatgttattttttattttta 1405936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 14230102 - 14230171
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggata 73  Q
    |||||||||||| ||||||||  |||| |||||| | || | |||||| |||||||| ||||||||||||    
T  14230102 tatatagaaagaaatgttcttaaaacagttagtaataatataattttagctcattttcaacaaatggata 14230171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 29703075 - 29703116
Alignment:
Q  92 aatgtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||    
T  29703075 aatgtattgaatcaaacaatgttatttattatttttagtata 29703116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 281144 - 281219
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcc 193  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||||| ||||| ||| ||| ||| |||||||||    
T  281144 ttcttatttttaatataatttgcattattgtttcttcaaaattttagccccacatatactaaatgtc-ggatccgcc 281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 461319 - 461474
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||||| ||||| ||||||||||||| | ||||||||||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||    
T  461319 acttatatataaagatatgttattttaacaattagcaatgatgtcattttagctcattttcaacaaatagataggagacgattttcattgtaatgtattg 461418  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaa 156  Q
    || |||||||||||| |||||||||||||||||| ||| |||||| ||| ||||||    
T  461419 taccaaacaatgttacttcttatttttaatatagtttgcattattatttctttaaa 461474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 33941628 - 33941814
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||| ||||||| |||||| ||         || |||||||||     
T  33941628 acttatatagaaagaaatgttcttttaacaattagcaatgatgttattttaactcattttcaacaaattgataggaga---------ttgtaatgtattt 33941718  T
Q  101 tatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaa-agtttagcctcacatgtaccaaaagtctggatccgcccc 195  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||   ||||||  ||||| |||| ||||||||||||||||||    
T  33941719 tatcaaacaatgttatttcttatttttaatatagtttgtattattgtttttttaaattttttagctccacatatacctaaagtctggatccgcccc 33941814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 30074620 - 30074788
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgac--gattttcattctaatgtat 98  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||| |||||||||||||| |||  |||||| ||| ||||||||    
T  30074620 acttatatagaaagagatgttcttttaacaattaacaatgatgtcattttaacttattttcaacaaatggataggagacgagattttgattgtaatgtat 30074719  T
Q  99 tgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctc 167  Q
    |||||||||| ||||| ||||||||||||||||||  ||| |||||  ||| ||| ||| |||||||||    
T  30074720 tgtatcaaacgatgttgtttcttatttttaatataatttgcattatcttttctttgaaaatttagcctc 30074788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 46090190 - 46090335
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtat 103  Q
    |||||||||||||| |||||||||||||||| ||  ||||||||||||| ||||||| |||||||| ||| | ||||||||||||| |||||||| |||     
T  46090190 tatatagaaagagaagttcttttaacaattactaaggatgtcattttaattcattttcaacaaatgaatatgagacgattttcattgtaatgtatcgtac 46090289  T
Q  104 caaacaatgttatttcttatttttaatataggttgtattattgttt 149  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||    
T  46090290 caaacaatgttattttttatttttaatatagtttgtatcattgttt 46090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 2945388 - 2945519
Alignment:
Q  2 cttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgac--gattttcattctaatgtatt 99  Q
    ||||||||||||| ||| |||||||||||||||| | |||||||||||||  ||||||| ||||||| |||||| |||  |||||| ||| |||||||||    
T  2945388 cttatatagaaagtgattttcttttaacaattagcaatgatgtcattttaggtcattttcaacaaatagataggagacgagatttttattgtaatgtatt 2945487  T
Q  100 gtatcaaacaatgttatttcttatttttaata 131  Q
    ||||||||||||||||||||||||||||||||    
T  2945488 gtatcaaacaatgttatttcttatttttaata 2945519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 32221865 - 32222025
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgac--gattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggt 136  Q
    |||||||||||||||||||||| |||||||||||||| |||  |||| ||| | |||| ||||||| ||||||||||||||||||||||||||||||       
T  32221865 tgatgtcattttaactcattttcaacaaatggataggagacgagattctcaatgtaatttattgtaccaaacaatgttatttcttatttttaatataata 32221964  T
Q  137 tgtattattgt-ttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |  |||||| | || ||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  32221965 tacattattttattttttaaaaatttagccccacatgtacaaaaagtctggatccgcccct 32222025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 25233059 - 25232916
Alignment:
Q  3 ttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgt 101  Q
    ||||||| ||||| |||||||||||| |||||| |  | ||| ||||||||||||||| |||||||||||||| ||| ||||||||| ||| | ||||||    
T  25233059 ttatataaaaagaaatgttcttttaaaaattagcagcgctgttattttaactcattttcaacaaatggataggagacaattttcattgtaattatattgt 25232960  T
Q  102 atcaaacaatgttatttcttatttttaatataggttgtattatt 145  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||    
T  25232959 atcaaacaatgttatttcttatttttcatatagtttgcattatt 25232916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 24658536 - 24658426
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||||| ||||||||||||||  |||||||||||| |||| |||||    
T  24658536 acttatatagaaagagatgttctattaaca-ttagcaatgatgtcattttaactcattttcaacaaatggataggaaacgattttcattgtaatatattg 24658438  T
Q  101 tatcaaacaatg 112  Q
    ||||||| ||||    
T  24658437 tatcaaagaatg 24658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 27080529 - 27080399
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||||| ||||||||||||||||||| | ||||||||||||| |||||||| |||||||  ||||| ||||||| | ||| |  |||||||    
T  27080529 acttatataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tgtattg 27080433  T
Q  101 tatcaaacaatgttatttcttatttttaatatag 134  Q
    |||||||||||| |||||||||||||||| ||||    
T  27080432 tatcaaacaatgatatttcttatttttaacatag 27080399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27197772 - 27197902
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||| ||||| ||||||||||||||||||| | ||||||||||||| |||||||| |||||||  ||||| ||||||| | ||| |  |||||||    
T  27197772 acttatataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tgtattg 27197868  T
Q  101 tatcaaacaatgttatttcttatttttaatatag 134  Q
    |||||||||||| |||||||||||||||| ||||    
T  27197869 tatcaaacaatgatatttcttatttttaacatag 27197902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 39785594 - 39785484
Alignment:
Q  19 gttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgtatcaaacaatgttatt 117  Q
    ||||||||||||||||  | || ||| |||||| ||||||||||||||||||||||  ||||||||||||| ||| ||||||| ||||||||||||||||    
T  39785594 gttcttttaacaattatcaatgttgttattttagctcatttttaacaaatggatagtagacgattttcattgtaattgtattgcatcaaacaatgttatt 39785495  T
Q  118 tcttattttta 128  Q
    |||||||||||    
T  39785494 tcttattttta 39785484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 34346837 - 34346960
Alignment:
Q  39 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttg 138  Q
    ||||||||||||   |||||||  ||||||||||| | ||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||    
T  34346837 tgatgtcattttcgttcattttccacaaatggatatgagacgattttcactttaatgtattgtataaaacaatgttatttcttatttttaatgtagtttg 34346936  T
Q  139 tattattgtttatttaaaagttta 162  Q
     |||||||||| ||| ||| ||||    
T  34346937 cattattgtttctttgaaatttta 34346960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38300370 - 38300481
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||| ||||||| | ||||||||||  | || |||||||||| |||||||| |||||||||||||| ||||||||||||| ||||  ||||    
T  38300370 acttatatagaaatagatgttttattaacaattatcaatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgtaatacattg 38300469  T
Q  101 tatcaaacaatg 112  Q
    ||||||||||||    
T  38300470 tatcaaacaatg 38300481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1691761 - 1691663
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtatt 99  Q
    ||||||||| ||||||||||||| ||||||||||  | |||| ||||||||||||||||| |||||||||||||| || ||||| |||| |||| ||||    
T  1691761 acttatatataaagagatgttctattaacaattaacaatgatatcattttaactcattttcaacaaatggataggagatgatttacattgtaatatatt 1691663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 49144016 - 49143946
Alignment:
Q  104 caaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgta 174  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||  ||||||||    
T  49144016 caaacaatgttatttcttatttttaatatagtttgtattattttttctttaaaattttagcaacacatgta 49143946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 26824474 - 26824559
Alignment:
Q  46 attttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgtatcaaacaatgttatttcttatttttaat 130  Q
    |||||| |||||||| ||||||| |||||| ||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||||    
T  26824474 attttacctcattttcaacaaatcgataggagacgattttcattgtaattgtattgcatcaaataatattatttcttatttttaat 26824559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39780997 - 39781090
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||||| ||||||||||| |  ||||||||||||| ||||    
T  39780997 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 39781090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43265933 - 43266026
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||||||||||||||||||||| |||||||| |||||||| ||| || |||||||| ||||||||||| |  || |||||||||| ||||    
T  43265933 acttttatagaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagatgattttcattgtaat 43266026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 36906370 - 36906243
Alignment:
Q  3 ttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgta 102  Q
    |||||||||||||||||||||||| |||||||  | | |||| ||||||||||| ||| |||||  | ||||  ||||||||||||||||||    ||||    
T  36906370 ttatatagaaagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattctaat----tgta 36906275  T
Q  103 tcaaacaatgttatttcttatttttaatatag 134  Q
    |   ||||||||||||| |||||||| |||||    
T  36906274 ttgcacaatgttatttcgtatttttagtatag 36906243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 7899482 - 7899403
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||||| ||||| ||| ||| || |||||||||||||    
T  7899482 ttcttatttttaatataatttgcattattgtttcttcaaaattttagccccacatatactaaatgtttggatccgcccct 7899403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 16841044 - 16841114
Alignment:
Q  62 aacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgttatttcttatttttaata 131  Q
    ||||||| |||||| ||| ||||||||| |||| |||||| |||||| ||| |||||||||||||||||||    
T  16841044 aacaaatagataggagacaattttcattgtaattgtattgcatcaaaaaatattatttcttatttttaata 16841114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 26787391 - 26787257
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtatt 99  Q
    |||||||||||| || || ||||||||| ||||||   || | | |||||| ||| |||| |||||||| ||| |  || ||||| ||| |||| |||||    
T  26787391 acttatatagaatgaaatattcttttaaaaattagcgatgctattattttatctcgttttcaacaaatgaataagacacaattttgattgtaattgtatt 26787292  T
Q  100 gtatcaaacaatgttatttcttatttttaatatag 134  Q
    | || ||||||||||||||||||| ||||||||||    
T  26787291 gcattaaacaatgttatttcttatctttaatatag 26787257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 26050162 - 26050085
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgccc 194  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||||| ||||| ||  ||| ||||||||||||||    
T  26050162 ttcttatttttaatataatttgcattattgtttcttcaaaattttagccccacatatattaaatgtctggatccgccc 26050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 40716907 - 40717008
Alignment:
Q  3 ttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgt 101  Q
    ||||| ||||||| |||||||||||| | |||||||   ||| |||||| |||||||| |||||||||||| | ||| ||||| ||| ||| ||||||||    
T  40716907 ttatacagaaagaaatgttcttttaaaagttagtaccactgttattttacctcattttcaacaaatggatatgagacaatttttattgtaattgtattgt 40717006  T
Q  102 at 103  Q
    ||    
T  40717007 at 40717008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 2945846 - 2945916
Alignment:
Q  123 tttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccct 196  Q
    |||||||||||| ||| ||||||   | ||| ||| |||||||||  |||||||||||||||||||||||||||    
T  2945846 tttttaatatagtttgcattatt---tctttgaaaatttagcctcgtatgtaccaaaagtctggatccgcccct 2945916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10512044 - 10512115
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggat 72  Q
    |||| |||||||||||||||||||  | ||||||| | || ||| |||||| |||||||| |||||||||||    
T  10512044 acttttatagaaagagatgttcttgaaccaattagcaatggtgttattttagctcattttcaacaaatggat 10512115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 6051216 - 6051154
Alignment:
Q  7 atagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 69  Q
    |||| |||||||||||||  |||| |||||| |||||| |||||| |||||||| ||||||||    
T  6051216 atagtaagagatgttcttgaaacagttagtaatgatgttattttatctcattttcaacaaatg 6051154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 26059521 - 26059448
Alignment:
Q  117 ttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatcc 190  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||||| ||||| ||  ||| ||||||||||    
T  26059521 ttcttatttttaatataatttgcattattgtttcttcaaaattttagccccacatatattaaatgtctggatcc 26059448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 33255023 - 33255064
Alignment:
Q  92 aatgtattgtatcaaacaatgttatttcttatttttaatata 133  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||    
T  33255023 aatgtattgaatcaaacaatgttatttattatttttagtata 33255064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 16461644 - 16461785
Alignment:
Q  24 tttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgttatttcttat 123  Q
    |||||||||||  | ||||||||||| | |||||||| |||||||| ||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  16461644 tttaacaattaacaatgatgtcatttaagctcattttcaacaaatgaataggagacaattttcattgtaatatattgtatcaaacaatgttatttcttat 16461743  T
Q  124 ttttaatataggttgtattattgtttatttaaaagtttagcc 165  Q
    ||||||||||| ||| |||||||||| ||| ||| |||||||    
T  16461744 ttttaatatagtttgcattattgtttctttgaaattttagcc 16461785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 6689316 - 6689174
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtat 103  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||||| |||| ||| || ||||||||||| ||||||||||||| |||||||||||||    
T  6689316 tatatagaaagagatgatcttttaacaattagcaatgatgtcattttagctcaatttcaataaatggataggagacgattttcattgtaatgtattgtat 6689217  T
Q  104 caaacaatgttatttcttatttttaatataggttgtattattgttt 149  Q
    |||||  ||||||   || |||||||||||  ||| ||||||||||    
T  6689216 caaaccttgttat---ttttttttaatataatttgcattattgttt 6689174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 2919958 - 2920062
Alignment:
Q  82 ttttcattctaatgtattgtatcaaacaatgttatttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaag 181  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||  ||| ||| ||| ||||||| |||||||| ||||||    
T  2919958 ttttcattgtaatgtattgtatcaaacaatgttatttcttatttttaatatagtttgcattat--tttctttgaaaatttagccccacatgtatcaaaag 2920055  T
Q  182 tctggat 188  Q
    |||||||    
T  2920056 tctggat 2920062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 21883371 - 21883260
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    |||||||||||||||||| |||| | ||||||||| | || |||||||||  |||||||| |||||||||||||  ||||||||||||| ||||| ||||    
T  21883371 acttatatagaaagagatattctataaacaattagcaatgctgtcattttttctcattttcaacaaatggatagaagacgattttcattgtaatgcattg 21883272  T
Q  101 tatcaaacaatg 112  Q
    ||| ||||||||    
T  21883271 tattaaacaatg 21883260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 30702801 - 30702677
Alignment:
Q  10 gaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaac 108  Q
    ||||||||||||||||| |||||||  ||||| || |||||| ||||||||  |||| |||||||  ||||||||| ||  | || ||||||||||||||    
T  30702801 gaaagagatgttctttttacaattaaaactgaagttattttagctcattttcgacaactggatagtagacgatttttatcgtcattgtattgtatcaaac 30702702  T
Q  109 aatgttatttcttatttttaatata 133  Q
    |||||||||||||||||||| ||||    
T  30702701 aatgttatttcttatttttagtata 30702677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 14607776 - 14607867
Alignment:
Q  23 ttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatgtt 114  Q
    |||||||||| || | |||||| |||||| |||||||| |||||||||||||| ||  ||||||||| ||||||||||||||||||||||||    
T  14607776 ttttaacaataagaaatgatgttattttagctcattttcaacaaatggataggagaaaattttcattgtaatgtattgtatcaaacaatgtt 14607867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 1975260 - 1975435
Alignment:
Q  17 atgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat-gtattgtatcaaacaatgtta 115  Q
    |||||||||||| |||||| | || | | ||||||||||||||| | ||||| || | | ||| ||||||||| | || |||||| ||||| ||||||||    
T  1975260 atgttcttttaaaaattagcaatgctattattttaactcattttcatcaaatagacatgagacaattttcattgttattgtattgaatcaaccaatgtta 1975359  T
Q  116 tttcttatttttaatataggttgtattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccg 191  Q
    ||| ||||||||||||||| ||  |||||| ||| ||||||| |||| || ||||| |||| || |||| ||||||    
T  1975360 tttattatttttaatatagtttacattattttttctttaaaattttaaccacacatataccgaatgtctagatccg 1975435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 24901795 - 24901708
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcat 88  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||||| ||||||||||| |  ||||||||||||    
T  24901795 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcat 24901708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 18817026 - 18816933
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaat 94  Q
    |||| ||| ||||||||||||||||| |||||||| |||||||| ||| || |||||||| |||||||||||    ||||||||||||| ||||    
T  18817026 acttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatgacagacgattttcattgtaat 18816933  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 30705394 - 30705275
Alignment:
Q  9 agaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaac 108  Q
    ||||||| || ||||||| |||||||  | ||| || ||||||| |||| || ||||||||||||   |||||||||     || |||||||||||||||    
T  30705394 agaaagatattttcttttcacaattaacattgaagttattttaaatcatgttcaacaaatggataatagacgatttt-----tattgtattgtatcaaac 30705300  T
Q  109 aatgttatttcttatttttaatata 133  Q
    |||||||||||||||||||| ||||    
T  30705299 aatgttatttcttatttttagtata 30705275  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 33704205 - 33704117
Alignment:
Q  25 ttaacaattagtactgatgtcattttaa-ctcatttttaacaaatggataggcgacgattttcattctaatgtattgtatcaaacaatg 112  Q
    ||||||||||  | |||||||||||| | |||||||||||||||| |||||  ||| ||||| ||| ||||||||||||||||||||||    
T  33704205 ttaacaattaacaatgatgtcatttttagctcatttttaacaaatagatagaagacaatttttattgtaatgtattgtatcaaacaatg 33704117  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 8150815 - 8150889
Alignment:
Q  48 tttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgtatcaaacaatgttatttctt 121  Q
    |||| |||||||| |||||||||||||  ||||||||| ||| ||| ||||||| |||||||||||||| |||||    
T  8150815 tttagctcattttcaacaaatggatagtagacgatttttattgtaattgtattgcatcaaacaatgttaattctt 8150889  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 35188103 - 35188058
Alignment:
Q  61 taacaaatggataggcgacgattttcattctaatgtattgtatcaa 106  Q
    ||||||||||||| | ||||||||||||| ||||||||||||||||    
T  35188103 taacaaatggataagagacgattttcattgtaatgtattgtatcaa 35188058  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 14430033 - 14430080
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcatttta 51  Q
    |||||||||||||||||||||  ||||||||||| |||||| ||||||    
T  14430033 tatatagaaagagatgttcttaaaacaattagtaatgatgtaatttta 14430080  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 14607871 - 14607926
Alignment:
Q  140 attattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgcccc 195  Q
    |||||||||| ||| ||| ||||||| | ||| |||||||||||||||||||||||    
T  14607871 attattgtttctttgaaattttagccccccatataccaaaagtctggatccgcccc 14607926  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 19267059 - 19267097
Alignment:
Q  96 tattgtatcaaacaatgttatttcttatttttaatatag 134  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  19267059 tattatatcaaataatgttatttcttatttttaatatag 19267097  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 35188015 - 35187957
Alignment:
Q  139 tattattgtttatttaaaagtttagcctcacatgtaccaaaagtctggatccgccccta 197  Q
    ||||||| ||||||||||| ||||||  |||||| ||| |||||||||||||| |||||    
T  35188015 tattattatttatttaaaattttagctccacatgaacctaaagtctggatccgtcccta 35187957  T

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Target: scaffold0311 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 835 - 964
Alignment:
Q  1 acttatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattg 100  Q
    ||||||||||||||| |||||||||| |||||||| | |||||| | |||| |||||||| |||||  | ||||  ||||||||||||| ||    ||||    
T  835 acttatatagaaagatatgttcttttgacaattagcaatgatgttagtttagctcattttcaacaatcgaatagtagacgattttcattgta----attg 930  T
Q  101 tatcaaacaatgttatttcttatttttaatatag 134  Q
    |||   |||||||||||||||||||||| |||||    
T  931 tattgcacaatgttatttcttatttttagtatag 964  T

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Target: scaffold0684 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 4216 - 4160
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttt 60  Q
    |||||||||||||||||||||  || |||||||| | |||| |||||||||||||||    
T  4216 tatatagaaagagatgttcttaaaataattagtaattatgtaattttaactcatttt 4160  T

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Target: scaffold0163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 3902 - 3958
Alignment:
Q  4 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttt 60  Q
    |||||||||||||||||||||  || |||||||| | |||| |||||||||||||||    
T  3902 tatatagaaagagatgttcttaaaataattagtaattatgtaattttaactcatttt 3958  T

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