View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12313_high_4 (Length: 429)
Name: NF12313_high_4
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_high_4 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: scaffold0168 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 20986 - 20585
Alignment:
| Q |
18 |
tacacaacaaacaatgaatagtttgtattcnnnnnnnctaagtgaagacatatttagttgattacctgtctcactgtctatattattaacactgtcagag |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20986 |
tacacaacaaacaatgaatagtttgtattcaaaaaaactaagtgaagacatatttagttaattacctgtctcactgtctatattattaacactgtcagag |
20887 |
T |
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| Q |
118 |
tcagagtgtaaggagtaagatccagtttctgaaaagggtgatctattttctatattcttcatgcggccaagcaaatatgttttatctgctttaatatctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20886 |
tcagagtgtaaggagtaagatccagtttctgaaaagggtgatctattttctatcttcttcatgcgaccaagcaaatatgttttatctgctttaatatctt |
20787 |
T |
|
| Q |
218 |
taaaatcctctcctcttgcttcattgagtctgtatgaaggagtattaccaccaccactttcttctattaaagttccatatttgtttctataaaaatccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20786 |
taaaatcctctcctcttgcttcattgagtctgtatgaaggagtattaccaccaccactttcttctattaaagttccatatttgtttctataaaaatccaa |
20687 |
T |
|
| Q |
318 |
ttcagcttctaaagctctaatctcttcctctcttttgataagcatgtcattagttgcctctaatgcttcctcatcgtactccgcctgttcttccatcatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20686 |
ttcagcttctaaagctctaatctcttcctctcttttgataagcatgtcattagttgcctctaatgcttcctcatcgtactcggcctgttcttccatcatt |
20587 |
T |
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| Q |
418 |
ct |
419 |
Q |
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|| |
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| T |
20586 |
ct |
20585 |
T |
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