View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12313_high_5 (Length: 413)

Name: NF12313_high_5
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12313_high_5
NF12313_high_5
[»] chr6 (3 HSPs)
chr6 (1-402)||(19007843-19008245)
chr6 (286-364)||(11232712-11232790)
chr6 (358-402)||(11232245-11232289)
[»] chr5 (2 HSPs)
chr5 (286-364)||(40933715-40933793)
chr5 (363-402)||(40933581-40933620)
[»] scaffold0010 (2 HSPs)
scaffold0010 (286-364)||(245693-245771)
scaffold0010 (363-402)||(245559-245598)
[»] chr7 (3 HSPs)
chr7 (286-364)||(37282428-37282507)
chr7 (363-402)||(37282602-37282641)
chr7 (50-128)||(18308325-18308403)
[»] scaffold0716 (1 HSPs)
scaffold0716 (288-364)||(2496-2572)
[»] chr8 (3 HSPs)
chr8 (194-227)||(36282981-36283014)
chr8 (183-216)||(24116645-24116678)
chr8 (12-103)||(25556732-25556823)
[»] chr4 (3 HSPs)
chr4 (12-103)||(723838-723929)
chr4 (183-226)||(36542220-36542264)
chr4 (183-226)||(36542620-36542664)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 19007843 - 19008245
Alignment:
Q  1 accttacatatttattatccacagattatgtgtatgcaccaacaattagttgcaaaataaaccaaaaccgataagagcctgggaaattaaagttgtaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  19007843 accttacatatttattatccacagattatgtgtatgcacccacaattagttgcaaaataaaccaaaaccgataagagccttggagattaaagttgtaaaa 19007942  T
Q  101 tattgtcttgaaatatttttaccaaaacatttcttcaaaccaaaatattttctcaaaatatatc-ggcgatagattttcatcgaatatattgggcaaaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19007943 tattgtcttgaaatatttttaccaaaacatttcttcaaaccaaaatattttctcaaaatatatcaggcgatagattttcatcgaatatattgggcaaaat 19008042  T
Q  200 aatttcttcaaatcaaaagtgtaaatacgttaagaaataatgttcttatgtgatgttgatgggcgaagtattcctcgccaagtcaactgatatcgtagcc 299  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19008043 aatttcttcaaatcaaaagtgaaaatacgttaagaaataatgttcttatgtgatgttgatgggcgaagtattcctcgccaagtcaactgatatcgtagcc 19008142  T
Q  300 atctttgtaaataaaaacaaccatatacttgatatcgcaagtaataaaaagatataacctgggacgatgtgaaacttggcgagatggattgatgacccac 399  Q
     |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19008143 gtctttgtaaataaaaacaattatatacttgatatcgcaagtaataaaaagatataacctgggacgatgtgaaacttggcgagatggattgatgacccac 19008242  T
Q  400 agg 402  Q
    |||    
T  19008243 agg 19008245  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 11232790 - 11232712
Alignment:
Q  286 ctgatatcgtagccatctttgtaaataaaaacaaccatatacttgatatcgcaagtaataaaaagatataacctgggac 364  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  11232790 ctgatatcgtagccatctttgtaaacaaaaacaaccatatacctgatatcgcgagtaataaaaagaaataacctgggac 11232712  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 11232289 - 11232245
Alignment:
Q  358 ctgggacgatgtgaaacttggcgagatggattgatgacccacagg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11232289 ctgggacgatgtgaaacttggcgagatggattgatgacccacagg 11232245  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 40933793 - 40933715
Alignment:
Q  286 ctgatatcgtagccatctttgtaaataaaaacaaccatatacttgatatcgcaagtaataaaaagatataacctgggac 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40933793 ctgatatcgtagccatctttgtaaataaaaacaaccatatacttgatatcgcgagtaataaaaagatataacctgggac 40933715  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 40933620 - 40933581
Alignment:
Q  363 acgatgtgaaacttggcgagatggattgatgacccacagg 402  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40933620 acgatgtgaaacttggcgagatggattgatgacccacagg 40933581  T

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Target: scaffold0010 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 245771 - 245693
Alignment:
Q  286 ctgatatcgtagccatctttgtaaataaaaacaaccatatacttgatatcgcaagtaataaaaagatataacctgggac 364  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  245771 ctgatatcatagccatttttgtaaataaaaacaaccatatacttgatatcgcgagtaataaaaagatataacctgggac 245693  T

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Target: scaffold0010; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 245598 - 245559
Alignment:
Q  363 acgatgtgaaacttggcgagatggattgatgacccacagg 402  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  245598 acgatgtgaaacttggcgagatggattgatgacccacagg 245559  T

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Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 37282428 - 37282507
Alignment:
Q  286 ctgatatcgtagccatcttt-gtaaataaaaacaaccatatacttgatatcgcaagtaataaaaagatataacctgggac 364  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37282428 ctgatatcgtagccattttttgtaaataaaaacaaccatatacttgatatcgcgagtaataaaaagatataacctgggac 37282507  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 37282602 - 37282641
Alignment:
Q  363 acgatgtgaaacttggcgagatggattgatgacccacagg 402  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37282602 acgatgtgaaacttggcgagatggattgatgacccacagg 37282641  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 18308403 - 18308325
Alignment:
Q  50 ttgcaaaataaaccaaaaccgataagagcctgggaaattaaagttgt-aaaatattgtcttgaaatatttttaccaaaac 128  Q
    ||||||||||||| |||| ||||||||||||   ||||||||||||| |||||||||| | |||||||||| | ||||||    
T  18308403 ttgcaaaataaac-aaaatcgataagagccttcaaaattaaagttgtaaaaatattgtatcgaaatattttaagcaaaac 18308325  T

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Target: scaffold0716 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 364
Target Start/End: Complemental strand, 2572 - 2496
Alignment:
Q  288 gatatcgtagccatctttgtaaataaaaacaaccatatacttgatatcgcaagtaataaaaagatataacctgggac 364  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||||  ||||||||||| ||||||| ||||||    
T  2572 gatatcgtccccatctttgtaaaaaaaaacaaccatatacttgatatcgagagtaataaaaaaatataacatgggac 2496  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 36282981 - 36283014
Alignment:
Q  194 caaaataatttcttcaaatcaaaagtgtaaatac 227  Q
    ||||||||||||||||||||||||||||||||||    
T  36282981 caaaataatttcttcaaatcaaaagtgtaaatac 36283014  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 24116678 - 24116645
Alignment:
Q  183 aatatattgggcaaaataatttcttcaaatcaaa 216  Q
    |||||||||||||||| |||||||||||||||||    
T  24116678 aatatattgggcaaaaaaatttcttcaaatcaaa 24116645  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 25556823 - 25556732
Alignment:
Q  12 ttattatccacagattatgtgtatgcaccaac-aattagttgcaaaataaaccaaaaccgataagagcctgggaaattaaagttgtaaaatat 103  Q
    |||||||||||| || |||| ||||||||||| || || |||||| ||||| |||||  |||||||| ||  |||||||| ||||||||||||    
T  25556823 ttattatccacatatgatgtatatgcaccaacaaaataattgcaagataaa-caaaattgataagagactccgaaattaaggttgtaaaatat 25556732  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 723929 - 723838
Alignment:
Q  12 ttattatccacagattatgtgtatgcaccaac-aattagttgcaaaataaaccaaaaccgataagagcctgggaaattaaagttgtaaaatat 103  Q
    |||||||||||| || |||| ||||||||||| || || |||||||||||| |||||  |||||||| ||  |||||||| ||||||||||||    
T  723929 ttattatccacatatgatgtatatgcaccaacaaaataattgcaaaataaa-caaaattgataagagacttcgaaattaaggttgtaaaatat 723838  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 36542220 - 36542264
Alignment:
Q  183 aatatattgggcaaaataatttcttcaaatc-aaaagtgtaaata 226  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||    
T  36542220 aatatattgagcaaaaaaatttcttcaaatcaaaaagtgtaaata 36542264  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 36542620 - 36542664
Alignment:
Q  183 aatatattgggcaaaataatttcttcaaat-caaaagtgtaaata 226  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||    
T  36542620 aatatattgagcaaaataatttcttcaaataaaaaagtgtaaata 36542664  T

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