View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12313_low_1 (Length: 469)
Name: NF12313_low_1
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 22 - 452
Target Start/End: Original strand, 12104518 - 12104949
Alignment:
| Q |
22 |
atggaagcatcta-tggtgttacgttccagatgtggaattggaattcgttgatgccaaagcggaagaagccaaacactccttatttgacgaattcgttta |
120 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12104518 |
atggaagcatctaatggagttacgttccagatgtggaattggaattcgttgatgccaaagcggaagaagccaaacactccttatttgacgaattcgttta |
12104617 |
T |
|
| Q |
121 |
ctcggttttggtctcgctagaagctgcgggtaaagaagaaaacaaggcaaatacacgttgttcccaattatgcatccacagtttcatcctgcatgttgaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12104618 |
ctcggttttggtctcgctagaagctgcgggtaaagaagaaaacaaggcaaatacacgttgttcccaattatgcatccacagtttcatcctgcatgttgaa |
12104717 |
T |
|
| Q |
221 |
cacaggatgcattattgggaaagaatgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaatatgg |
320 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12104718 |
cacaggatgcattattggcaaagaatgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagcttagttttctcaatatgg |
12104817 |
T |
|
| Q |
321 |
gtaaggagtttaatattactctcgtaacattaccctcactcaaaaccctacatttgaaatacattcgctttcaacaaggcgatgatcttattttccttac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12104818 |
gtaaggagtttaatattactctcgtaacattaccctcactcaaaaccctacatttgaaatacattcgctttcaacaaggcgatgatcttattttccttac |
12104917 |
T |
|
| Q |
421 |
agataattgtctaaatcttgaagatcctctac |
452 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |
|
|
| T |
12104918 |
agataattgtccaaatcttgaagatcttctac |
12104949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 12094178 - 12094470
Alignment:
| Q |
22 |
atggaagcatctatggtgttacgttccagatgtggaattggaattcgttgatgccaaagcggaagaagccaaacactccttatttgacgaattcgtttac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
12094178 |
atggaagcatctatggtgttacgttccagatgtggaattggaattcgtcgatgacaaagcggaagaagccaaaaactccttattcgacaaattcgtttac |
12094277 |
T |
|
| Q |
122 |
tcggttttggtctcgctagaagctgcgggtaaagaagaaaacaaggcaaatacacgttgttcccaattatgcatccacagtttcatcctgcatgttgaac |
221 |
Q |
| |
|
|| ||||||||||||| |||| |||||||||| || |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12094278 |
tcagttttggtctcgc--gaagttgcgggtaaacaacaaaagaaggcaaatacacgtttttcccaattatgtatccacagtttcatcctgcatgttgaac |
12094375 |
T |
|
| Q |
222 |
acaggatgcattattgggaaagaatgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
12094376 |
acaggatgcattattgggaaagaatgatccctcatctgccttattctatccttacttgtgcaaccctcgttgttcttaagctcggttttctcaat |
12094470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 385
Target Start/End: Complemental strand, 1446488 - 1446370
Alignment:
| Q |
267 |
ctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaatatgggtaagg-agtttaatattactctcgtaacattaccctcactcaaaa |
365 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||||||| ||| |||||||| || | ||| ||||| || | ||| |||||| |||||||||| |
|
|
| T |
1446488 |
ctattcttacttgtacaacccttgttgttcttaagctcagttatctttatatgggtccggcattttgttatta-tcccataatattaccttcactcaaaa |
1446390 |
T |
|
| Q |
366 |
ccctacatttgaaatacatt |
385 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
1446389 |
ccctacatttgaaagacatt |
1446370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 1459818 - 1459773
Alignment:
| Q |
340 |
tctcgtaacattaccctcactcaaaaccctacatttgaaatacatt |
385 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1459818 |
tctcataagattaccctcactcaaaaccctacatctgaaagacatt |
1459773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 45810998 - 45810966
Alignment:
| Q |
347 |
acattaccctcactcaaaaccctacatttgaaa |
379 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
45810998 |
acattaccttcactcaaaaccctacatttgaaa |
45810966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University