View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12313_low_10 (Length: 341)
Name: NF12313_low_10
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 51547347 - 51547654
Alignment:
| Q |
18 |
aaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggatatatgaggaaaatgtt |
117 |
Q |
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| T |
51547347 |
aaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggatatatgaggaaaatgtt |
51547446 |
T |
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| Q |
118 |
gaaatttcaagcaataaaaccaatattgttctacttggtgatggaagggatctcactgtcattactggcaatagaagtgatgttgatggatggaccacct |
217 |
Q |
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| T |
51547447 |
gaaatttcaagcaataaaaccaatattgttctacttggtgatggaagggatcaaactgtcattactggcaatagaagtgatgttgatggatggaccacct |
51547546 |
T |
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| Q |
218 |
tcagatctgcaactttaggtaatcattttacactttattttttagactatatatattaagttttaatgtggctaatataacttgtaaagttgaaattcac |
317 |
Q |
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| T |
51547547 |
tcagatctgcaactttaggtaatcattttacactttattttttagac----tatattaagttttaatgtggctaatataacttgtaaagttgaaattcac |
51547642 |
T |
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| Q |
318 |
gtgtcacaggtt |
329 |
Q |
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| T |
51547643 |
gtgtcaccggtt |
51547654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 19475239 - 19475458
Alignment:
| Q |
18 |
aaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggatatatgaggaaaatgtt |
117 |
Q |
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|||||||||||| |||||||| || || | |||||||||||||| || | | ||||||| | || ||||| ||||||||| ||||| ||||||||| |
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| T |
19475239 |
aaactttagcactattaatgatgctataaactttgctccaaataatagtttggttaggatagttatttatgttaaagaagggtattatgatgaaaatgtt |
19475338 |
T |
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| Q |
118 |
gaaatttcaagcaataaaaccaatattgttctacttggtgatggaagggatctcactgtcattactggcaatagaagtgatgttgatggatggaccacct |
217 |
Q |
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||||| |||| ||||||| || ||||| | |||||||||||||| ||| |||||||| ||||| || ||||||| |||||||||||||||||| | |
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| T |
19475339 |
gaaataccaagttataaaactaacattgtgatgcttggtgatggaagtgattctactgtcatcactggtaacagaagtgttgttgatggatggaccactt |
19475438 |
T |
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| Q |
218 |
tcagatctgcaactttaggt |
237 |
Q |
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|||||||||||||||||||| |
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| T |
19475439 |
tcagatctgcaactttaggt |
19475458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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