View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12313_low_13 (Length: 304)
Name: NF12313_low_13
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 19007592 - 19007866
Alignment:
| Q |
19 |
aatgtctcattagctttttcatcttcatatttca--ataaacaataacaatagatcctaatatatttgtggagttccaaatacatgaatatcaacgatac |
116 |
Q |
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| T |
19007592 |
aatgtctcattaactttttcatcttcatatttcacaataaacaataacaatagatcctaatatatttgtggaattccaaatacatgaatatcaacgatac |
19007691 |
T |
|
| Q |
117 |
tgagtttgcattgatcaattatagaatatcataagagatttggaatttaaagcttttaattcaaagctactcatcctgctattatagagatgaaaacaac |
216 |
Q |
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| T |
19007692 |
tgagtttgcattgatcaattatagaatatcataagagatttggaatttaaagcttttaattcaaagctactcatcctgctattatagagatgaaaacaac |
19007791 |
T |
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| Q |
217 |
taggttccaaacgcaattttataaacttcatgtataataataacaagggtcaccttacatatttattatccacag |
291 |
Q |
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| T |
19007792 |
taggttccaaacgcaattttataaacttcatgtataataataacaagggtcaccttacatatttattatccacag |
19007866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 22621047 - 22621111
Alignment:
| Q |
19 |
aatgtctcattagctttttcatcttcatatttcaataaacaataacaatagatcctaatatattt |
83 |
Q |
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| T |
22621047 |
aatgtctcgttaactttttcatcttcatatttcaataaacaataacaatagagcctaatatattt |
22621111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 20010934 - 20010998
Alignment:
| Q |
19 |
aatgtctcattagctttttcatcttcatatttcaataaacaataacaatagatcctaatatattt |
83 |
Q |
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| T |
20010934 |
aatgtctcgttaactttttcatcttcatatttcaataaacaataacaatagatcctaatatattt |
20010998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 25555895 - 25555831
Alignment:
| Q |
19 |
aatgtctcattagctttttcatcttcatatttcaataaacaataacaatagatcctaatatattt |
83 |
Q |
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|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25555895 |
aatgtctcgttaactttttcctcttcatatttcaataaacaataacaatagatcctaatatattt |
25555831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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