View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12313_low_2 (Length: 457)
Name: NF12313_low_2
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 25251617 - 25251185
Alignment:
| Q |
18 |
tataattctaaattcagaataagaatgcaaaaacagacaaattgtttataagatttctatattcatttcctatatttcttctcaggggatattgctcggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25251617 |
tataattctaaattcagaataagaatgcaaaaacagacaaattgtttataagatttctatattcatttgctatatttcttctcaggggatattgctcggt |
25251518 |
T |
|
| Q |
118 |
ctatccaataccgctggagtactggctggtgttcttggaacagcagcaacaggttacattctgcaacatggtaagtatttgttcttcatatttattctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251517 |
ctatccaataccgctggagtactggctggtgttcttggaacagcagcaacaggttacattctgcaacatggtaagtatttgttcttcatatttattctta |
25251418 |
T |
|
| Q |
218 |
ctaaatgttaatggtcaattatctcggaaacttaaaatattacgtgaagccgtcaataattttattatatctcttaatggtgaagaatgagtatatattt |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251417 |
ctaaatgttaatggtcaattatctcagaaacttaaaatattacgtgaagccgtcaataattttattatatctcttaatggtgaagaatgagtatatattt |
25251318 |
T |
|
| Q |
318 |
ctactgtcttaaatctgaaaagtatcaatttgatattgatagtttggcaaagaagcattattcgttccacctaatacttcaatgaaatcttatctttgga |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251317 |
ctactgtcttaaatctgaaaagtatcaatttggtattgatagtttggcaaagaagcattattcgttccacctaatacttcaatgaaatcttatctttgga |
25251218 |
T |
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| Q |
418 |
acaactgtatgacgccattcattctctctgctt |
450 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
25251217 |
acaaccgtatgacgccattcattctctctgctt |
25251185 |
T |
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