View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12313_low_3 (Length: 432)
Name: NF12313_low_3
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 12818290 - 12818712
Alignment:
| Q |
1 |
tcttcattaaaatcataaatccagttctcatcatcaggaggtaaccaagcttggggcggcgcagccaaaatccgagtggaattaatcggaaccggagcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12818290 |
tcttcattaaaatcataaatccagttctcatcatcaggaggtaaccaagcttggggcggcgcagccaaaatccgagtagaattaatcggaaccggagcat |
12818389 |
T |
|
| Q |
101 |
acacagcaagatccatcggccccggccaaatatctgacaaatcaccaatatctacctgcggaacatcaccggtggacattacggaaaaaatctcagcgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12818390 |
acacagcaagatccatcggccccggccaaatatctgacaaatcaccaatatctacctgcggaacatcaccggtggacattacggaaaaaatatcagcgtt |
12818489 |
T |
|
| Q |
201 |
ggttaaccccgcatcctcaggctcagaaactcccacaaca------tcaacgtcaatgtcatcctcaagatcagccaaagaaatacccatttgagcagga |
294 |
Q |
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| T |
12818490 |
ggttaaccccgcatcctcaggctcagaaactcccacaacatcaacgtcaacgtcaatgtcatcctcaagatcagccaaagaaatacccatttgagcagga |
12818589 |
T |
|
| Q |
295 |
tctagggtttcagaaattgaactcatcattgaagatgaattcatttgattctctttttgttcttgttcttgttcaccacgtggtgaatttgaatcagaca |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12818590 |
tctagggtttcagaaattgaactcatcattgaagatgaattcatttgattctcttcttgttcttgttcttgttcaccacgtggtgaatttgaatcagaca |
12818689 |
T |
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| Q |
395 |
ttgaaattttgaaagttagggtt |
417 |
Q |
| |
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| T |
12818690 |
ttgaaattttgaaagttagggtt |
12818712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 12755343 - 12755392
Alignment:
| Q |
3 |
ttcattaaaatcataaatccagttctcatcatcaggaggtaaccaagctt |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12755343 |
ttcattaaaatcataaatccagttctcatcatcaggaggtaaccaagctt |
12755392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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