View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12313_low_6 (Length: 383)
Name: NF12313_low_6
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 427830 - 428068
Alignment:
| Q |
11 |
cagagatggagaaaggaaggtggaaaatagattaaagaatgcacacgtaatgcataaaaacaataccaatgtaatgcaccacaagtccatcacaattcag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
427830 |
cagagatggagaaaggaaggtggaaaatagattaaagaatgcacacgtaatgcataaaaacaacaccaatgtaatgcaccacaagtccatcacaattcag |
427929 |
T |
|
| Q |
111 |
aagcaacataatagtgatttttagcacagaaaattctcataaatcaactacaagtctagaactagttggtgtcaagaatcctaagattttgagcaattaa |
210 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
427930 |
aagcaacataatagtgattttt-gtacagaaaattctcataaatcaactacaagtgtagaactagttggtgtcaagaatcctaagattttgagcaattaa |
428028 |
T |
|
| Q |
211 |
gatcaatccagataaacaaataagcataatatgtaaatac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
428029 |
gatcaatccagataaacaaataagcataatatgtaaatac |
428068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 225 - 367
Target Start/End: Original strand, 428076 - 428218
Alignment:
| Q |
225 |
aacaaataagcataatatgtaaatacgatttgattaagatcaatccagatcaacagacaatgcaacaaaaggatacaattatgaaattctattcatcatg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
428076 |
aacaaataagcataatatgtaaatacgatttgattaagatcaatccagatcaacagaaaatgcaacaaaaggatacaattatgaaattctatttatcatg |
428175 |
T |
|
| Q |
325 |
atatctcatcttaagaaggatgattcataaataaccaagaata |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
428176 |
atatctcatcttaagaaggatgattcataaataaccaagaata |
428218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 15564403 - 15564636
Alignment:
| Q |
13 |
gagatggagaaaggaaggtggaaaatagattaaagaatgcacacgtaatgcataaaa-acaataccaatgtaatgcaccacaagtccatcacaattcaga |
111 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15564403 |
gagatggagaaaggaaggcgtcgaatagagtaaagaatgcacatgtaatgcacaaaaaacaataccaatgtaatgcaccacaagtccatcacaattcaca |
15564502 |
T |
|
| Q |
112 |
agcaacataatagtgatttttagcacagaaaattctcataaatcaactacaagtctagaactagttggtgtcaagaatcctaagattttgagcaattaag |
211 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||| ||||||||| ||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
15564503 |
agcaacataatagttatttttagtacagaaaattctcatgaatgaactacaagggaagaactagttggtttctagaatcctaagattttaagcaattaag |
15564602 |
T |
|
| Q |
212 |
atcaatccagataaacaaataagcataatatgta |
245 |
Q |
| |
|
||| ||||| || |||||| |||||||||||||| |
|
|
| T |
15564603 |
atcgatccaaatcaacaaacaagcataatatgta |
15564636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 18393045 - 18392838
Alignment:
| Q |
43 |
taaagaatgcacacgtaatgcataaaaacaataccaatgtaatgcaccacaagtccatcacaattcagaagcaacataatagtgatttttagcacagaaa |
142 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
18393045 |
taaagaatgcacatgtaatgcacaaaaacaataccaatgtaaggcaccaaaagtccatcacaattcacaagcaacataatagtgatttttagtacagaaa |
18392946 |
T |
|
| Q |
143 |
attctcataaatcaactacaagtctagaactagttggtgtcaagaatcctaagattttgagcaattaagatcaatccagataaacaaataagcataatat |
242 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||| ||| | || |||||| |||||||| || |
|
|
| T |
18392945 |
attcccataaaggaactacaagggaagaactagttggtttatagaatcctaagatttaaagcaattaagatcgatctaaatcaacaaagaagcataagat |
18392846 |
T |
|
| Q |
243 |
gtaaatac |
250 |
Q |
| |
|
||| |||| |
|
|
| T |
18392845 |
gtagatac |
18392838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 367
Target Start/End: Complemental strand, 18388342 - 18388283
Alignment:
| Q |
308 |
aaattctattcatcatgatatctcatcttaagaaggatgattcataaataaccaagaata |
367 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||| | ||||||| |||| |
|
|
| T |
18388342 |
aaattctatttatcatgatatctcatcttaacaaggatgattcatcagtaaccaaaaata |
18388283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University