View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12313_low_7 (Length: 382)
Name: NF12313_low_7
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12313_low_7 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 18088547 - 18088190
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18088547 |
cacagatgtattagaaatgataccttgggatggatgtaaggctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
18088448 |
T |
|
| Q |
117 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacacca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18088447 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacacca |
18088348 |
T |
|
| Q |
217 |
cacgaatacgtttttttactggcaaaaacccgtgctcnnnnnnnntacaaaannnnnnnnngagcacgggcttttctggcccaagtgtatcttattttta |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18088347 |
cacgaatacgtttttttactggcaaaaacccgtgctcaaaaaatattttgtatttttttttgagcacgggcttttctggcccaagtgtatcttattttta |
18088248 |
T |
|
| Q |
317 |
tgacgaattattttccttggttaacaatagttgtagttttcccaatagccacaggttc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18088247 |
tgacgaattattttccttggttaacaatagttgtagttttcccaatagccgcaggttc |
18088190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 509388 - 509624
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
509388 |
cacagatgtattagaaatgataccttgggatggatgtaaggctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
509487 |
T |
|
| Q |
117 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacacca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
509488 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacacca |
509587 |
T |
|
| Q |
217 |
cacgaatacgtttttttactggcaaaaacccgtgctc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
509588 |
cacgaatacgtttttttactggcaaaaacccgtgctc |
509624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 9071991 - 9072164
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
116 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
9071991 |
cacaaatgtattacaaatgataccttgagatagatgtaaagctaagtaaatagcttctgccccaagaa--gtggactgtgttggttgtaagaggtgtgag |
9072088 |
T |
|
| Q |
117 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctt |
192 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9072089 |
tccgtttgtctgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctt |
9072164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 278 - 374
Target Start/End: Original strand, 509650 - 509746
Alignment:
| Q |
278 |
gagcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaatagccacaggttc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
509650 |
gagcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaatagccgcaggttc |
509746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 6933327 - 6933563
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6933327 |
cacagatgtattagaaatgataccttgggatggatgtaaggctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
6933426 |
T |
|
| Q |
117 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacacca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6933427 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacacca |
6933526 |
T |
|
| Q |
217 |
cacgaatacgtttttttactggcaaaaacccgtgctc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6933527 |
cacgaatacgtttttttactggcaaaaacccgtgctc |
6933563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 6933590 - 6933677
Alignment:
| Q |
279 |
agcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaatagcc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6933590 |
agcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaatagcc |
6933677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 26038724 - 26038608
Alignment:
| Q |
136 |
tcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacaccacacgaatacgtttttttac |
235 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
26038724 |
tcttaagtgttcgggtatatttagggcctaaaacaattcgaagtatgagtctagtttattgatacgtttcaaaaagcaccacatgaatacgtt-ttttac |
26038626 |
T |
|
| Q |
236 |
tggcaaaaacccgtgctc |
253 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26038625 |
tggcaaaaacccgtgctc |
26038608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 26038584 - 26038500
Alignment:
| Q |
279 |
agcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaatagcc |
366 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |
|
|
| T |
26038584 |
agcacgggcttttatggctcaagtgtatcttatttttatgacgaattattttcattggtt---aatagttgtagtttttccaatagcc |
26038500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 27029531 - 27029468
Alignment:
| Q |
171 |
actcgaagtatgggtctagcttattgatacgtttcaa-aaaacaccacacgaatacgttttttt |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
27029531 |
actcgaagtatgggtttagcttattgatatgtttcaaaaaaacaccacacaaatacgttttttt |
27029468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 15758455 - 15758690
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15758455 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacaaaggactgtgttggttgtaagaggtgtgag |
15758554 |
T |
|
| Q |
117 |
tccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacacca |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15758555 |
tccgcttgtccgacggatttcataagtgttcgggtttatttagggcctgaaacaactcgaagtataagtctagcttattgatacgtttcaaaaaacacca |
15758654 |
T |
|
| Q |
217 |
cacgaatacgtttttttactggcaaaaacccgtgct |
252 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15758655 |
cacggatacgtttttttactggcaaaaacccgtgct |
15758690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 15758718 - 15758813
Alignment:
| Q |
279 |
agcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaatagccacaggttc |
374 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15758718 |
agcacgggcttttttggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaatagccgcaggttc |
15758813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 171067 - 171302
Alignment:
| Q |
18 |
acagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgagt |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| || || ||||| || || ||||| ||||||||||| ||||| | |
|
|
| T |
171067 |
acagatgtattagaaatgataccctgggatggatgtaaagccaagcaaattgcttccgcgccgagaaccgaagattgtgtgggttgtaagagatgtgaat |
171166 |
T |
|
| Q |
118 |
ccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacaccac |
217 |
Q |
| |
|
| || || ||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
171167 |
ctgcctgcccgacagattttttaagtgtccgcgtttatttagggcctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacaccac |
171266 |
T |
|
| Q |
218 |
acgaatacgtttttttactggcaaaaacccgtgctc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
171267 |
acgaatacgtttttttactggcaaaaacccgtgctc |
171302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 171328 - 171406
Alignment:
| Q |
278 |
gagcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagtttt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
171328 |
gagcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatacttgttgtttt |
171406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 21547837 - 21547963
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgag |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21547837 |
cacagatgtattagaaatgatacattgggatggatgtaaagctaagcaaatagcttctgccccaagaacataggactgtgttggttgtaagaggtgtgag |
21547936 |
T |
|
| Q |
117 |
tccgcttgtccgacggatttcttaagt |
143 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21547937 |
tccgcttgtccgacggatttcttaagt |
21547963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 30234552 - 30234391
Alignment:
| Q |
62 |
gcaaatagcttctgccccaagaacagaggactgtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagtgttcgggtttatttaggg |
161 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| | |||||||||||| |
|
|
| T |
30234552 |
gcaaatagcttatgcaccaagaacataggactgtgttggttgtaagaggtgtgagtctccttatcagacaaatttcttaagtgt--gagtttatttaggg |
30234455 |
T |
|
| Q |
162 |
cctgaaacaactcgaagtatgggtctagcttattgatacgtttcaaaaaacaccacacgaatacgttttttt |
233 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
30234454 |
tctgaaacaactcgaag--------tagtttattgatacatttcaaaaaacaccacacaaatacgttttttt |
30234391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 30234345 - 30234262
Alignment:
| Q |
279 |
agcacgggcttttctggcccaagtgtatcttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaat |
362 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30234345 |
agcacgggcttttctatctcaagtgtattttatttttatgacgaattattttccttggttaacaatagttgtagttttcccaat |
30234262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 1023933 - 1024015
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaacagaggactgtgttg |
99 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
1023933 |
cacatatgtattagaaatgataccttaggatagatgtaaagttaagcaaatagcttctatcccaagaatagaggactgtgttg |
1024015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 30234623 - 30234554
Alignment:
| Q |
17 |
cacagatgtattagaaatgataccttgggatggatgtaaagctaagcaaatagcttctgccccaagaaca |
86 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
30234623 |
cacagatgtattagaaatcatgccttgggatggatgtaaagctaagcaaatagcttatgcaccaagaaca |
30234554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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