View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12313_low_8 (Length: 380)

Name: NF12313_low_8
Description: NF12313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12313_low_8
NF12313_low_8
[»] chr7 (11 HSPs)
chr7 (18-367)||(17509975-17510324)
chr7 (18-367)||(17542890-17543239)
chr7 (18-367)||(17474491-17474840)
chr7 (18-367)||(17578374-17578723)
chr7 (98-252)||(4110265-4110418)
chr7 (126-259)||(38788070-38788203)
chr7 (284-359)||(38788964-38789039)
chr7 (126-256)||(6202346-6202476)
chr7 (277-359)||(45406686-45406768)
chr7 (188-277)||(42078952-42079043)
chr7 (282-364)||(43989666-43989748)
[»] chr8 (17 HSPs)
chr8 (31-359)||(18431394-18431723)
chr8 (107-280)||(45528191-45528364)
chr8 (126-259)||(15275942-15276074)
chr8 (126-259)||(15456311-15456443)
chr8 (126-259)||(43215482-43215615)
chr8 (98-235)||(13758937-13759074)
chr8 (139-279)||(15276761-15276901)
chr8 (139-279)||(15457130-15457270)
chr8 (281-337)||(14714616-14714672)
chr8 (225-280)||(14715283-14715338)
chr8 (98-256)||(36990307-36990464)
chr8 (177-278)||(760675-760776)
chr8 (114-171)||(38291332-38291389)
chr8 (114-192)||(19263274-19263352)
chr8 (146-251)||(38291798-38291903)
chr8 (279-335)||(18953369-18953425)
chr8 (98-210)||(23140510-23140622)
[»] chr3 (14 HSPs)
chr3 (31-359)||(12125334-12125661)
chr3 (126-259)||(14240504-14240637)
chr3 (279-366)||(11655403-11655490)
chr3 (146-259)||(9266735-9266848)
chr3 (126-257)||(9265297-9265428)
chr3 (201-278)||(11654666-11654744)
chr3 (114-279)||(6436844-6437009)
chr3 (300-340)||(34849856-34849896)
chr3 (126-253)||(6087136-6087263)
chr3 (114-192)||(50441-50519)
chr3 (168-270)||(9611703-9611805)
chr3 (282-364)||(20935017-20935099)
chr3 (323-364)||(42400444-42400485)
chr3 (114-270)||(9262778-9262934)
[»] chr4 (17 HSPs)
chr4 (107-278)||(42756730-42756901)
chr4 (278-366)||(50158170-50158258)
chr4 (126-259)||(13909809-13909942)
chr4 (126-259)||(24180606-24180739)
chr4 (66-259)||(28474760-28474953)
chr4 (284-359)||(28475656-28475731)
chr4 (169-278)||(11560217-11560325)
chr4 (114-279)||(24182416-24182581)
chr4 (126-254)||(12576850-12576978)
chr4 (300-341)||(48683180-48683221)
chr4 (209-277)||(285101-285169)
chr4 (277-364)||(13228676-13228763)
chr4 (225-280)||(37516417-37516472)
chr4 (281-364)||(42727943-42728026)
chr4 (282-343)||(24183445-24183506)
chr4 (182-259)||(35648561-35648638)
chr4 (279-359)||(11559498-11559578)
[»] scaffold1315 (1 HSPs)
scaffold1315 (107-257)||(1280-1430)
[»] scaffold1293 (1 HSPs)
scaffold1293 (107-257)||(641-791)
[»] chr2 (18 HSPs)
chr2 (126-259)||(45661121-45661254)
chr2 (126-259)||(45054003-45054136)
chr2 (126-259)||(45662566-45662698)
chr2 (125-255)||(6466940-6467070)
chr2 (279-337)||(29651782-29651840)
chr2 (128-252)||(45058390-45058515)
chr2 (127-279)||(14872721-14872873)
chr2 (284-364)||(19040681-19040761)
chr2 (98-210)||(41752880-41752992)
chr2 (187-258)||(5788087-5788158)
chr2 (182-277)||(45275964-45276059)
chr2 (302-360)||(13439396-13439454)
chr2 (322-360)||(19994500-19994538)
chr2 (279-353)||(36729293-36729367)
chr2 (152-270)||(41753962-41754080)
chr2 (323-364)||(3395514-3395555)
chr2 (279-364)||(5788889-5788974)
chr2 (284-364)||(39839110-39839190)
[»] scaffold1933 (1 HSPs)
scaffold1933 (169-254)||(552-637)
[»] chr6 (9 HSPs)
chr6 (146-279)||(11554338-11554471)
chr6 (126-235)||(24175786-24175895)
chr6 (146-279)||(4852807-4852940)
chr6 (127-270)||(34515077-34515221)
chr6 (284-364)||(7428507-7428587)
chr6 (145-280)||(24397914-24398048)
chr6 (279-336)||(24360161-24360218)
chr6 (98-162)||(18090618-18090682)
chr6 (278-342)||(20874199-20874263)
[»] chr1 (12 HSPs)
chr1 (114-270)||(39047632-39047786)
chr1 (101-270)||(31089445-31089615)
chr1 (127-279)||(16852890-16853042)
chr1 (284-364)||(20306755-20306835)
chr1 (284-364)||(40946503-40946583)
chr1 (216-259)||(27342218-27342261)
chr1 (322-364)||(1992406-1992448)
chr1 (322-364)||(30001802-30001844)
chr1 (110-271)||(43386370-43386531)
chr1 (327-359)||(8313455-8313487)
chr1 (277-341)||(43387115-43387179)
chr1 (300-364)||(49879847-49879911)
[»] scaffold0191 (3 HSPs)
scaffold0191 (127-259)||(5937-6070)
scaffold0191 (126-238)||(12225-12337)
scaffold0191 (282-359)||(5143-5220)
[»] scaffold0061 (1 HSPs)
scaffold0061 (98-203)||(45555-45660)
[»] scaffold0017 (1 HSPs)
scaffold0017 (98-203)||(153127-153232)
[»] scaffold0022 (1 HSPs)
scaffold0022 (281-337)||(126581-126637)
[»] scaffold0012 (2 HSPs)
scaffold0012 (282-342)||(96635-96695)
scaffold0012 (225-280)||(95949-96004)
[»] chr5 (2 HSPs)
chr5 (281-337)||(2260826-2260882)
chr5 (159-259)||(24541800-24541900)
[»] scaffold0169 (1 HSPs)
scaffold0169 (177-256)||(5142-5221)
[»] scaffold0074 (1 HSPs)
scaffold0074 (145-280)||(30837-30971)
[»] scaffold1312 (1 HSPs)
scaffold1312 (182-259)||(10-87)
[»] scaffold0050 (1 HSPs)
scaffold0050 (126-222)||(10567-10663)
[»] scaffold0159 (2 HSPs)
scaffold0159 (187-258)||(32460-32531)
scaffold0159 (279-364)||(33262-33347)
[»] scaffold1345 (1 HSPs)
scaffold1345 (282-364)||(1832-1914)
[»] scaffold1737 (1 HSPs)
scaffold1737 (278-342)||(530-594)
[»] scaffold0377 (1 HSPs)
scaffold0377 (188-277)||(12546-12637)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 17509975 - 17510324
Alignment:
Q  18 ataaatgataaggaaaattaagcaaatgacatcccaaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17509975 ataaatgataaggaaaattaagcaaatgacatcccaaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 17510074  T
Q  118 cattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510075 cattcgaataagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttc 17510174  T
Q  218 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17510175 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactc 17510274  T
Q  318 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510275 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 17510324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 17543239 - 17542890
Alignment:
Q  18 ataaatgataaggaaaattaagcaaatgacatcccaaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17543239 ataaatgataaggaaaattaagcaaatgacatcccaaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 17543140  T
Q  118 cattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17543139 cattcgaataagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttc 17543040  T
Q  218 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17543039 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactc 17542940  T
Q  318 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17542939 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 17542890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 17474491 - 17474840
Alignment:
Q  18 ataaatgataaggaaaattaagcaaatgacatcccaaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17474491 ataaatgataaggaaaattaagcaaatgacatcccaaaactaaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 17474590  T
Q  118 cattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttc 217  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  17474591 tattcgaataagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttc 17474690  T
Q  218 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17474691 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactc 17474790  T
Q  318 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17474791 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 17474840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 17578723 - 17578374
Alignment:
Q  18 ataaatgataaggaaaattaagcaaatgacatcccaaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17578723 ataaatgataaggaaaattaagcaaatgacatcccaaaactaaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatca 17578624  T
Q  118 cattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttc 217  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  17578623 tattcgaataagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttc 17578524  T
Q  218 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17578523 aatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaactc 17578424  T
Q  318 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17578423 aaatttgacacattaacatctctccagtaagtgtcagactctttgtgcct 17578374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 98 - 252
Target Start/End: Original strand, 4110265 - 4110418
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 197  Q
    |||||||| |||||| |||||||| ||||||||||||| |||||| |||||| |||||||||| | |||| ||||||| ||||||||| ||| ||||  |    
T  4110265 tacaatgg-ttgaataatcacatttgaataagagaaactccacaaataagattgacaccacatttccatctaaaaccttaagatattatgtaaattgatc 4110363  T
Q  198 atctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaac 252  Q
    |||||||  | |||||| |||||||||||| ||||||  || |||| ||||||||    
T  4110364 atctcacttacatgttgctcaatatatactattgcattcaatgtagtagtttaac 4110418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 38788070 - 38788203
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||| |||||| | |||| |||||||||||| ||| |||||  | |||| || ||||||||||| |||||||   |||||||| ||||||| ||    
T  38788070 taagagaaactccacaaatgagattgacaccacatcttcattcaaaattttaagacatcaggtatattggacatctcagttatatgttgctcaatattta 38788169  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    || |||| ||||| ||| ||| ||||||||||||    
T  38788170 cttttgcgtcaaatgtaaaaggttaactcacaca 38788203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 38788964 - 38789039
Alignment:
Q  284 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 359  Q
    |||||||||| |||| ||||||||| ||||| | | | || ||||||||||||||||||| |||||||||||||||    
T  38788964 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactct 38789039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 6202476 - 6202346
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||||| | || | |||| |||||  ||| | ||| ||||| || |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  6202476 taagagaaaccctataaatgagattgacactgcattttcattcaaaatcttaagacattaagtatattggacatctcacttatatgttgcttaatattta 6202377  T
Q  226 ctcttgcatcaaaagtagaagtttaactcac 256  Q
    ||||||||||||| ||| ||| |||||||||    
T  6202376 ctcttgcatcaaatgtaaaaggttaactcac 6202346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 45406768 - 45406686
Alignment:
Q  277 tctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 359  Q
    ||||||||||| ||||||||| |||||| ||| ||||| ||| | ||||||||||||||| |||||| ||||| | |||||||    
T  45406768 tctcaacatctcctcttacatcaaatgtcaaattttaactcacaattgacacattaacatttctccattaagtatgagactct 45406686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 42078952 - 42079043
Alignment:
Q  188 tatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagta--gaagtttaactcacacacgacgcattaatatctct 277  Q
    |||||||  ||||||||  | |||||| ||||||| ||||||||||||||| |||  ||||||||||||||||| ||| |||||| ||||||    
T  42078952 tatattgatcatctcacttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatctct 42079043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 43989748 - 43989666
Alignment:
Q  282 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||| | ||||||||||  ||||||||    
T  43989748 acatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagtgtcaggatctttgtg 43989666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 31 - 359
Target Start/End: Original strand, 18431394 - 18431723
Alignment:
Q  31 aaaattaagcaaatgacatcccaaaa--ataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataa 128  Q
    ||||||||||||||||||||||||||  ||||||| | |||||||| |||||||||||||||| |||  |||||| ||||| || |||||||| ||| ||    
T  18431394 aaaattaagcaaatgacatcccaaaactataaaaaaaatcattataatgtttggatttcagagggatcctacaatagattggatcatcacatttgaacaa 18431493  T
Q  129 gagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactc 228  Q
    ||||||||||||||||||||||||||||||||||  |||  ||||||||||| |||||||||||||| ||||||| | |||||||| |||||||||||||    
T  18431494 gagaaaccccacaagtaagatggacaccacatctctatctcaaacctgaagacattaggtatattggtcatctcaaatatatgttgctcaatatatactc 18431593  T
Q  229 ttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacac 328  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| ||||||| |||| |||||||||||||||||||||||| ||||| ||| |||||||||    
T  18431594 ttgcatcaaaattagaagtttaactcacacatgacacattaacatctctcccaacgtctactcttacataaaatgtgaaa-tttaactcatatttgacac 18431692  T
Q  329 attaacatctctccagtaagtgtcagactct 359  Q
    |||| |||||||||| ||||||| |||||||    
T  18431693 attatcatctctccattaagtgttagactct 18431723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 280
Target Start/End: Complemental strand, 45528364 - 45528191
Alignment:
Q  107 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 206  Q
    |||||| |||||||| || ||||||||||||||||||| ||||  |||||| |||| || |||||| || |||| |||||||||||| | |||||||       
T  45528364 ttgaatcatcacatttgattaagagaaaccccacaagtgagatacacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcattt 45528265  T
Q  207 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 280  Q
    |||||||| ||||||||||||| |||||| || || ||| ||||||||| ||| ||  |||||||||| |||||    
T  45528264 atatgttgctcaatatatactcgtgcatccaacgttgaaatttaactcatacatgatacattaatatccctctc 45528191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 15275942 - 15276074
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||||| |||| | |||| |||||||||||| ||| | |||||| |||| |||||||||||||| ||||| ||  ||| |||| || |||| ||    
T  15275942 taagagaaaccc-acaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatacgttgctcgatattta 15276040  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    ||||| ||||||| ||| ||| ||||||||||||    
T  15276041 ctcttacatcaaatgtaaaaggttaactcacaca 15276074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 15456311 - 15456443
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||||| |||| | |||| |||||||||||| ||| | |||||| |||| |||||||||||||| ||||| ||  ||| |||| || |||| ||    
T  15456311 taagagaaaccc-acaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatacgttgctcgatattta 15456409  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    ||||| ||||||| ||| ||| ||||||||||||    
T  15456410 ctcttacatcaaatgtaaaaggttaactcacaca 15456443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 43215482 - 43215615
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||| ||||||| || | |||| ||||| |||| | ||| |||||||  |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  43215482 taagaggaaccccataaatgagattgacactacattttcattcaaaaccgtaagacattaagtatattggacatctcacttatatgttgcttaatattta 43215581  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    ||||||||||||| ||| ||| ||||||||||||    
T  43215582 ctcttgcatcaaatgtaaaaggttaactcacaca 43215615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 13759074 - 13758937
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 197  Q
    |||||||  |||||| |||| |||||  |||||||| |||||||| | |||| |||||||||| |  | ||||||||| |||| ||||||||||  || |    
T  13759074 tacaatgagttgaatcatcatattcggctaagagaatccccacaaatgagattgacaccacattttgacccaaaaccttaagacattaggtatacgggtc 13758975  T
Q  198 atctcacaaatatgttgttcaatatatactcttgcatc 235  Q
    ||||||| ||||||||||| || |  ||||||||||||    
T  13758974 atctcactaatatgttgtttaacaactactcttgcatc 13758937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 15276761 - 15276901
Alignment:
Q  139 acaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaa 238  Q
    |||||| |||| |||||||||||| || | ||||||| || | |||| ||||||| | |||||||||   |||||  |||||||||||| |||| || ||    
T  15276761 acaagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaa 15276860  T
Q  239 agtagaagtttaactcacacacgacgcattaatatctctct 279  Q
     |||||||||||||| ||||| ||| |||||| || |||||    
T  15276861 tgtagaagtttaacttacacatgacacattaacatatctct 15276901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 15457130 - 15457270
Alignment:
Q  139 acaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaa 238  Q
    |||||| |||| |||||||||||| || | ||||||| || | |||| ||||||| | |||||||||   |||||  |||||||||||| |||| || ||    
T  15457130 acaagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaa 15457229  T
Q  239 agtagaagtttaactcacacacgacgcattaatatctctct 279  Q
     |||||||||||||| ||||| ||| |||||| || |||||    
T  15457230 tgtagaagtttaacttacacatgacacattaacatatctct 15457270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 14714672 - 14714616
Alignment:
Q  281 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 337  Q
    ||||| |||||||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  14714672 aacatatactcttacataaaatttgaaactttaactcacacttgacacattaacatc 14714616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 14715338 - 14715283
Alignment:
Q  225 actcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 280  Q
    |||||||||||||| |||||||||||||||||||| ||  |||||| |||||||||    
T  14715338 actcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctctc 14715283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 256
Target Start/End: Complemental strand, 36990464 - 36990307
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 197  Q
    ||||||| ||||||| |||||||| || ||||||||| || |||| | | || |||||||||| | ||  |||||||| |||| ||||  |||||||| |    
T  36990464 tacaatgtattgaataatcacatttgactaagagaaa-ccaacaaatgatattgacaccacatattcactcaaaaccttaagacattacatatattggtc 36990366  T
Q  198 atctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcac 256  Q
    |||||||  | |||||||| ||| | ||||||||| || || ||||| |||||| ||||    
T  36990365 atctcacttacatgttgtttaatgtctactcttgcgtctaatgtagatgtttaattcac 36990307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 760776 - 760675
Alignment:
Q  177 aagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctc 276  Q
    |||| |||||||||||| | ||  ||||  |||||||||| ||  |||| |||||||||||| ||||| |||||||||| ||| |||||||| | |||||    
T  760776 aagacattaggtatattagtcacttcactgatatgttgtttaaagtatattcttgcatcaaatgtagatgtttaactcatacatgacgcattcacatctc 760677  T
Q  277 tc 278  Q
    ||    
T  760676 tc 760675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 38291389 - 38291332
Alignment:
Q  114 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaa 171  Q
    |||||||| || ||||||||| |||| || |||||| |||||||||||||||||||||    
T  38291389 atcacatttgactaagagaaatcccataaataagattgacaccacatctgcatccaaa 38291332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 19263274 - 19263352
Alignment:
Q  114 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatat 192  Q
    |||||||| || ||| ||| ||| || |||| |||| |||||||||||| ||||| |||||| |||| |||||||||||    
T  19263274 atcacattagactaacagataccacaaaagtgagattgacaccacatctccatcctaaaccttaagacattaggtatat 19263352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 38291903 - 38291798
Alignment:
Q  146 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 245  Q
    |||| ||||| |||||| |||||||||||| |||| |||||||||||||   || ||||  |||||||  ||||| |  |||||||||||||| || |||    
T  38291903 agattgacacgacatcttcatccaaaaccttaagacattaggtatattgataatttcacttatatgtttctcaatgtccactcttgcatcaaatgtggaa 38291804  T
Q  246 gtttaa 251  Q
     |||||    
T  38291803 ctttaa 38291798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 18953369 - 18953425
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaaca 335  Q
    ||||||||||||||| |||  ||||| ||| ||||||||| | ||||||||||||||    
T  18953369 tcaacatctactcttgcatccaatgtcaaattttaattcacagttgacacattaaca 18953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 23140510 - 23140622
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 197  Q
    |||||||  |||||| |||| |||||  ||||||||  |||| || | | || |||||||||| |  | ||||||||| |||| ||||||||||| ||||    
T  23140510 tacaatgagttgaatcatcatattcggctaagagaattcccataaatgaaattgacaccacattttgacccaaaaccttaagacattaggtatataggcc 23140609  T
Q  198 atctcacaaatat 210  Q
    ||||||| |||||    
T  23140610 atctcactaatat 23140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 31 - 359
Target Start/End: Original strand, 12125334 - 12125661
Alignment:
Q  31 aaaattaagcaaatgacatcccaaaaataaaaatattcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataaga 130  Q
    ||||||||| ||||||||||| |||| |||||| ||| |||||| ||||||||||||| || |||  |||||||||||| || |||||||| ||| ||||    
T  12125334 aaaattaagaaaatgacatcctaaaactaaaaaaatt-attataatgtttggatttcatagggatcgtacaatggattggatcatcacatttgaacaaga 12125432  T
Q  131 gaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactctt 230  Q
    ||||||||||||||||||| ||||||||||||  |||  |||| |||||| |||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  12125433 gaaaccccacaagtaagatagacaccacatctctatctcaaacatgaagacattaggtatattggtcatctcacatatatgttgctcaatatatactctt 12125532  T
Q  231 gcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacat 330  Q
    ||||||||||||||||| ||||||||  | ||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||  |||||||||||    
T  12125533 gcatcaaaagtagaagtgtaactcactaatgacacattaacatctctctcaacatctacttttacataaaatgtgaaattttaactcgcatttgacacat 12125632  T
Q  331 taacatctctccagtaagtgtcagactct 359  Q
    || ||||||| || || |||||| |||||    
T  12125633 tatcatctctgcattaggtgtcaaactct 12125661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 14240504 - 14240637
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    ||||||||||||||||| | |||| |||||||||||| ||| ||||| || || |||| ||||||||||| ||||||||| |||||||| |||| || ||    
T  14240504 taagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaacatatcaggtatattggacatctcacatatatgttgctcaaaattta 14240603  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    || |||  ||||| ||| ||| ||||||||||||    
T  14240604 cttttgggtcaaatgtaaaaggttaactcacaca 14240637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 11655403 - 11655490
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcc 366  Q
    ||||||| ||||||||||||||| ||| |||||||| ||| |||||| || |||||||||||||| |||||||||||||||| |||||    
T  11655403 tcaacatttactcttacataaaacgtggaactttaactcacatttgatacgttaacatctctccattaagtgtcagactcttcgtgcc 11655490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 9266848 - 9266735
Alignment:
Q  146 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 245  Q
    |||| |||||||||| | ||| |||||||| |||| |||||||||||||| ||||| ||  ||| |||| ||||||| ||||||| ||||||| ||| ||    
T  9266848 agattgacaccacattttcattcaaaaccttaagacattaggtatattggacatcttacttatacgttgctcaatatttactcttacatcaaatgtaaaa 9266749  T
Q  246 gtttaactcacaca 259  Q
    | ||||||||||||    
T  9266748 ggttaactcacaca 9266735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 9265428 - 9265297
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||||| | || | |||| ||||| |||  | ||| |||||||| |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  9265428 taagagaaaccctataaatgagattgacactacagtttcattcaaaaccttaagacattaagtatattggacatctcacttatatgttgcttaatattta 9265329  T
Q  226 ctcttgcatcaaaagtagaagtttaactcaca 257  Q
    ||||||||||||| ||| ||| ||||||||||    
T  9265328 ctcttgcatcaaatgtaaaaggttaactcaca 9265297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 11654666 - 11654744
Alignment:
Q  201 tcacaaatatgttgttcaatatatactcttgcatcaaaa-gtagaagtttaactcacacacgacgcattaatatctctc 278  Q
    ||||| |||||||| | |||||||||||||||||||||| |||||| |||||||| ||||||||| ||||  |||||||    
T  11654666 tcacatatatgttgcttaatatatactcttgcatcaaaatgtagaaatttaactctcacacgacgtattaccatctctc 11654744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 279
Target Start/End: Complemental strand, 6437009 - 6436844
Alignment:
Q  114 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 213  Q
    |||||||| ||  |||||||| || |||||| |||| ||| |||||||| || | || |||| || | |||| ||||||| | |||||||||   |||||    
T  6437009 atcacatttgatcaagagaaatccgacaagtgagattgacgccacatcttcacctaacaccttaatacattatgtatattagtcatctcacattcatgtt 6436910  T
Q  214 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 279  Q
      |||||||||||| |||| || || |||||||||||||| | ||| ||| |||||| || |||||    
T  6436909 tctcaatatatacttttgcttccaatgtagaagtttaacttagacatgacacattaacatatctct 6436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 34849856 - 34849896
Alignment:
Q  300 aatgtgaaactttaattcaaatttgacacattaacatctct 340  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  34849856 aatgtgaaactttaattcacatatgacacattaacatctct 34849896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 6087136 - 6087263
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    ||||||||||||||||| | ||||  |||| |||| | || | |||||||  |||||||||||||| | |  |||||||  |||||||| |   ||||||    
T  6087136 taagagaaaccccacaattgagattaacactacattttcacctaaaaccttgagatattaggtatacttgtaatctcacttatatgttgctagttatata 6087235  T
Q  226 ctcttgcatcaaaagtagaagtttaact 253  Q
    || |||||| ||| ||||||||||||||    
T  6087236 ctattgcatgaaatgtagaagtttaact 6087263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 50519 - 50441
Alignment:
Q  114 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatat 192  Q
    |||||||| || ||| ||| ||| || |||| |||| |||||||||||| ||||| |||||| |||| |||||||||||    
T  50519 atcacattagactaacagataccacaaaagtgagattgacaccacatctccatcccaaaccttaagacattaggtatat 50441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 9611703 - 9611805
Alignment:
Q  168 caaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcat 267  Q
    |||||||| |||| ||||||||||  || |||||||| || || ||| | || || |||| ||||||| || |||||||||||| ||||||| ||| |||    
T  9611703 caaaaccttaagacattaggtatacgggtcatctcactaacattttgcttaaaatctactattgcatccaacgtagaagtttaaatcacacatgacacat 9611802  T
Q  268 taa 270  Q
    |||    
T  9611803 taa 9611805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 20935017 - 20935099
Alignment:
Q  282 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||||| || |||| ||| | ||| ||||| ||| |  ||||||||||||||||||||| ||||||||||  ||||||||    
T  20935017 acatctactattgcatacaatataaaattttaactcacacctgacacattaacatctctccattaagtgtcaggatctttgtg 20935099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 42400444 - 42400485
Alignment:
Q  323 tgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||||||||||||||||| ||||||||||  ||||||||    
T  42400444 tgacacattaacatctctccattaagtgtcaggatctttgtg 42400485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 9262934 - 9262778
Alignment:
Q  114 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 213  Q
    |||||||| ||  |||||||| || ||| || |||| || | ||||||| || | ||||||| || | |||| ||||||| | |||||||||   |||||    
T  9262934 atcacatttgatcaagagaaatccgacatgtgagattgagagcacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtt 9262835  T
Q  214 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 270  Q
      |||||||||| | |||| || || |||||||||||||| ||||| ||| ||||||    
T  9262834 tctcaatatatatttttgcttccaatgtagaagtttaacttacacatgacacattaa 9262778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 42756730 - 42756901
Alignment:
Q  107 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 206  Q
    |||||| |||||||| |  | |||||||||||| |||| |||| |||||||||||| |||||||||||| ||||  ||||||||||| | ||| | ||      
T  42756730 ttgaatcatcacatttggcttagagaaaccccataagtgagattgacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaactt 42756829  T
Q  207 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 278  Q
    |||||||| |||||||||| ||||||||| || |||||||||| ||||||| | ||| |||||| |||||||    
T  42756830 atatgttgctcaatatatagtcttgcatccaatgtagaagttttactcacaaatgacacattaacatctctc 42756901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 366
Target Start/End: Complemental strand, 50158258 - 50158170
Alignment:
Q  278 ctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtgcc 366  Q
    |||||||| ||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||| ||||| ||||||    
T  50158258 ctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaagtgtcaaactctctgtgcc 50158170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 13909942 - 13909809
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    ||||||||||||||||| | |||| |||||||||||| ||| ||||| || |||| || ||||||||||| ||||||||  |||||||| ||||||| ||    
T  13909942 taagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatatgttgctcaatattta 13909843  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
     | |||| ||||| ||| ||| ||||||||||||    
T  13909842 tttttgcgtcaaatgtaaaaggttaactcacaca 13909809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 24180606 - 24180739
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||||||| || | || | ||||| |||| | ||| |||||||| ||||||||||||||||||| ||| |||   |||||||| | ||||| ||    
T  24180606 taagagaaaccccaaaaatgagtttgacactacattttcattcaaaaccttaagatattaggtatattggacatttcagttatatgttgcttaatattta 24180705  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    ||||||||||||| ||| ||| ||||||||||||    
T  24180706 ctcttgcatcaaatgtaaaaggttaactcacaca 24180739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 259
Target Start/End: Original strand, 28474760 - 28474953
Alignment:
Q  66 ttcattatagtgtttggatttcagagagattttacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgca 165  Q
    ||||| |||||||||||| ||  ||| ||  ||| |||||||||| | |||||||| ||  ||||||||||||| || | |||| |||||||||||| ||    
T  28474760 ttcatcatagtgtttggagttttgagtgagcttataatggattga-tcatcacatttgaccaagagaaaccccaaaaatgagattgacaccacatcttca 28474858  T
Q  166 tccaaaacctg-aagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 259  Q
      ||||||||| |||| |||| ||||||| |||||||||||   ||||   |||||||||||| |||| |  || ||||||||||||||||||||    
T  28474859 ctcaaaacctgaaagacattatgtatattagccatctcacattcatgtatctcaatatatacttttgctttcaatgtagaagtttaactcacaca 28474953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 28475656 - 28475731
Alignment:
Q  284 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 359  Q
    |||||||||| |||| ||||||||| ||||| | | | || ||||||||||||||||||| |||||||||||||||    
T  28475656 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactct 28475731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 11560325 - 11560217
Alignment:
Q  169 aaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcatt 268  Q
    ||||||| |||| || | ||||||| | ||||||||  |||| |||| ||||||||||||||||||| || ||| ||||||||||||| || ||| ||||    
T  11560325 aaaaccttaagacatcaagtatatttgtcatctcacgtatatattgt-caatatatactcttgcatccaatgtataagtttaactcacccatgacacatt 11560227  T
Q  269 aatatctctc 278  Q
    || |||||||    
T  11560226 aacatctctc 11560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 279
Target Start/End: Original strand, 24182416 - 24182581
Alignment:
Q  114 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 213  Q
    |||||||| ||  |||||||| || |||||| |||| |||||||||||| || |  |||||| || | |||| ||||||| | |||||||||   |||||    
T  24182416 atcacatttgatcaagagaaatccgacaagtgagattgacaccacatcttcacctgaaaccttaatacattatgtatattagtcatctcacattcatgtt 24182515  T
Q  214 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 279  Q
      |||||||||||| |||| |  || |||||||||||||| ||||| ||| |||||| || |||||    
T  24182516 tctcaatatatacttttgctttcaatgtagaagtttaacttacacatgacacattaacatatctct 24182581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 12576850 - 12576978
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||| |||||||| | |||| || |||| || |  | ||||||| | |||| | ||||||||| || |||||||| ||||||||||| |||||  |    
T  12576850 taagagaatccccacaaatgagattgagaccatattttgacccaaaactttaagacaataggtatatgggtcatctcactaatatgttgtttaatatcca 12576949  T
Q  226 ctcttgcatcaaaagtagaagtttaactc 254  Q
    |||||||||| || ||| |||||||||||    
T  12576950 ctcttgcatccaacgtaaaagtttaactc 12576978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 48683221 - 48683180
Alignment:
Q  300 aatgtgaaactttaattcaaatttgacacattaacatctctc 341  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  48683221 aatgtgaaactttaactcacatttgacacattaacatctctc 48683180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 285169 - 285101
Alignment:
Q  209 atgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctct 277  Q
    |||||||| || || |||||||||||| ||  |||||||||||||| |||| |||||||||| ||||||    
T  285169 atgttgtttaaaatctactcttgcatccaacctagaagtttaactctcacatgacgcattaacatctct 285101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 13228763 - 13228676
Alignment:
Q  277 tctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    |||||||||||||| || |||  ||||||  | ||||| ||| | |||||||||||||||||||||| ||||| | ||||| ||||||    
T  13228763 tctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgagactttttgtg 13228676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 37516417 - 37516472
Alignment:
Q  225 actcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 280  Q
    ||||||||||||||  ||||||||||||||||||| ||  |||||| |||||||||    
T  37516417 actcttgcatcaaatatagaagtttaactcacacatgaaacattaacatctctctc 37516472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 42727943 - 42728026
Alignment:
Q  281 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||||||||| ||| |||||| ||||||||| | | | ||||||||||||||| ||||   ||| ||| ||||||||||||    
T  42727943 aacatctactcttgcatcaaatgtaaaactttaagtaacaattgacacattaacatatctcacttaattgtgagactctttgtg 42728026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 24183445 - 24183506
Alignment:
Q  282 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcca 343  Q
    |||||||||||| |||| ||||||||| ||||| | | | || |||||||||||||||||||    
T  24183445 acatctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctcca 24183506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 35648561 - 35648638
Alignment:
Q  182 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 259  Q
    |||||||||||||  | |||| |  |||||||| |||||||||||| |||| |  || ||||||||||||||||||||    
T  35648561 attaggtatattgttcttctcgcttatatgttgctcaatatatactattgcttacaatgtagaagtttaactcacaca 35648638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 11559578 - 11559498
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 359  Q
    ||||||| ||||||| |||| ||| | ||| ||||| ||| | || ||| |||||||||||| || |||||||||||||||    
T  11559578 tcaacatttactcttgcatacaatatcaaattttaagtcacactttacatattaacatctcttcaataagtgtcagactct 11559498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 1430 - 1280
Alignment:
Q  107 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 206  Q
    |||||| |||||||| |  |||||||||||||| |||| |||| |||||||||||| |||||||||||| ||||  |||| |||||| | ||| | ||      
T  1430 ttgaatcatcacatttggctaagagaaaccccataagtgagattgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaactt 1331  T
Q  207 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcaca 257  Q
    ||||||||  ||||||||| ||||||||| || |||||||||| |||||||    
T  1330 atatgttgcacaatatatagtcttgcatccaatgtagaagttttactcaca 1280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 641 - 791
Alignment:
Q  107 ttgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaa 206  Q
    |||||| |||||||| |  |||||||||||||| |||| |||| |||||||||||| |||||||||||| ||||  |||| |||||| | ||| | ||      
T  641 ttgaatcatcacatttggctaagagaaaccccataagtgagattgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaactt 740  T
Q  207 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcaca 257  Q
    ||||||||  ||||||||| ||||||||| || |||||||||| |||||||    
T  741 atatgttgcacaatatatagtcttgcatccaatgtagaagttttactcaca 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 45661254 - 45661121
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||||||| || | |||| ||||| |||| | ||| ||||| || |||| |||| ||||||||| ||||||||  |||||||| | ||||| ||    
T  45661254 taagagaaaccccataaatgagattgacactacattttcattcaaaatcttaagacattaagtatattggacatctcacttatatgttgcttaatattta 45661155  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    ||||||||||||| ||| ||| ||||||||||||    
T  45661154 ctcttgcatcaaatgtaaaaggttaactcacaca 45661121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 45054003 - 45054136
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||| |||||||||||| | |||| |||||||||||| ||| ||||| || |||| || ||||||||||   |||||||  |||||||| ||||||| ||    
T  45054003 taagtgaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattgaatatctcacttatatgttgctcaatattta 45054102  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    || |||| ||||| ||| ||| ||||||||||||    
T  45054103 cttttgcgtcaaatgtaaaaggttaactcacaca 45054136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 45662698 - 45662566
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    |||||||||||| |||| | |||| |||||||||||| ||| ||||| || |||| |||| ||||||||| ||||| ||  ||| |||| ||||||| ||    
T  45662698 taagagaaaccc-acaattgagattgacaccacatcttcattcaaaatcttaagacattacgtatattggacatcttacttatacgttgctcaatattta 45662600  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    ||||| ||||||| ||| ||| ||||||||||||    
T  45662599 ctcttacatcaaatgtaaaaggttaactcacaca 45662566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 6467070 - 6466940
Alignment:
Q  125 ataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatat 224  Q
    ||||||||||||  | |||| |||| |||||||||||| ||||||||| || |||| ||||| |||||| | ||| |||   |||| ||| |||||||||    
T  6467070 ataagagaaacctgataagtgagattgacaccacatctccatccaaaaacttaagacattagttatatttgtcatttcatttatatcttgctcaatatat 6466971  T
Q  225 actcttgcatcaaaagtagaagtttaactca 255  Q
    ||||||| ||| || |||||||||| |||||    
T  6466970 actcttggatccaatgtagaagttttactca 6466940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 29651840 - 29651782
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 337  Q
    ||||||||||||||| |||  ||||||||||||||| ||| ||||||||||||||||||    
T  29651840 tcaacatctactcttgcattcaatgtgaaactttaactcacatttgacacattaacatc 29651782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 45058390 - 45058515
Alignment:
Q  128 agagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaa-gatattaggtatattggccatctcacaaatatgttgttcaatatatac 226  Q
    |||||||||||| || | |||| |||| ||||||| ||  ||||||||||| || |||| ||||||||||||||||||    |||||  |||||||||||    
T  45058390 agagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggccatctcactttcatgtttctcaatatatac 45058489  T
Q  227 tcttgcatcaaaagtagaagtttaac 252  Q
    | |||| || || |||||||||||||    
T  45058490 ttttgcttccaatgtagaagtttaac 45058515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 14872873 - 14872721
Alignment:
Q  127 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatac 226  Q
    |||||||| || |||||| |||| |||||||||||| || | ||  ||| || | |||| ||||||| | |||||||||   |||||  |||||||||||    
T  14872873 aagagaaatccgacaagtgagattgacaccacatcttcacctaactccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 14872774  T
Q  227 tcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 279  Q
    | |||| || || |||||||||||||| ||||| ||| |||||| || |||||    
T  14872773 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctct 14872721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 19040761 - 19040681
Alignment:
Q  284 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  19040761 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 19040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 41752880 - 41752992
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 197  Q
    |||||||  |||||| |||| |||||  ||||||||  |||| || | |||| |||||||||| |  | ||||||||| |||| ||||||||||| ||||    
T  41752880 tacaatgagttgaatcatcatattcggctaagagaattcccataaatgagattgacaccacattttgacccaaaaccttaagacattaggtatatgggcc 41752979  T
Q  198 atctcacaaatat 210  Q
    ||||||| |||||    
T  41752980 atctcactaatat 41752992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 5788087 - 5788158
Alignment:
Q  187 gtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacac 258  Q
    ||||||| | ||||||||  |||||||| ||||||||||||||| |||  || |||||||||||| ||||||    
T  5788087 gtatatttgtcatctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacac 5788158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 45276059 - 45275964
Alignment:
Q  182 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctct 277  Q
    |||| ||||||||| ||||||||  | | |||||| ||| | ||||||||||||||| |||||  ||| | ||||||| ||| |||||||||||||    
T  45276059 attaagtatattggtcatctcacttacacgttgtttaatgtctactcttgcatcaaatgtagatattttattcacacatgacacattaatatctct 45275964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 13439396 - 13439454
Alignment:
Q  302 tgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctt 360  Q
    ||||||||||||||||| |||||||||||| | || |||| | ||||| ||||||||||    
T  13439396 tgtgaaactttaattcacatttgacacattgatatttctctactaagtatcagactctt 13439454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 19994500 - 19994538
Alignment:
Q  322 ttgacacattaacatctctccagtaagtgtcagactctt 360  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  19994500 ttgacacattagcatctctccattaagtgtcagactctt 19994538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 36729293 - 36729367
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtca 353  Q
    ||||||||||||||| |||| ||||||||| ||| | ||| | |||||| |||||||| ||||||  ||||||||    
T  36729293 tcaacatctactcttgcatacaatgtgaaatttttactcacacttgacaaattaacatatctccataaagtgtca 36729367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 41753962 - 41754080
Alignment:
Q  152 acaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaa 251  Q
    |||||||||||  || |||||||| |||| ||| | |||||| | ||||||||  |||||||| ||||||| ||||||| |||  || ||| ||||||||    
T  41753962 acaccacatctaaattcaaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataagtttaa 41754061  T
Q  252 ctcacacacgacgcattaa 270  Q
     | ||||| ||| ||||||    
T  41754062 atgacacatgacacattaa 41754080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 3395514 - 3395555
Alignment:
Q  323 tgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  3395514 tgacacattaacatctctccattaagtatgagactctttgtg 3395555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 5788889 - 5788974
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    |||||||||||| || |||  ||||||  | ||||| ||| ||||||||||||||||||||| || ||||| | ||||||| ||||    
T  5788889 tcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtg 5788974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 39839110 - 39839190
Alignment:
Q  284 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||  ||||||||||  ||||||||    
T  39839110 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccgttaagtgtcaggatctttgtg 39839190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1933 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1933
Description:

Target: scaffold1933; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 552 - 637
Alignment:
Q  169 aaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactc 254  Q
    ||||||| |||||||||||||||| || |||||||| ||||||||||| |||||  ||||||||||| || ||| |||||||||||    
T  552 aaaaccttaagatattaggtatatgggtcatctcactaatatgttgtttaatatccactcttgcatccaacgtaaaagtttaactc 637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 11554338 - 11554471
Alignment:
Q  146 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 245  Q
    |||| |||||||||| |  | ||||||||| |||| |||||||| || || |||||||| ||||||||||| || |  ||||| |||||| || ||||||    
T  11554338 agattgacaccacattttgacccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgtagaa 11554437  T
Q  246 gtttaactcacacacgacgcattaatatctctct 279  Q
    | |||||||||||| ||| |||||| ||||||||    
T  11554438 ggttaactcacacatgacacattaacatctctct 11554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 24175895 - 24175786
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    ||||||||||||||||| |||||| |||||||||| || | |||||| || ||||||||| | ||||||   ||||||   |||||||| ||||||||||    
T  24175895 taagagaaaccccacaactaagattgacaccacatatgtacccaaaatcttaagatattatgcatattgattatctcatttatatgttgctcaatatata 24175796  T
Q  226 ctcttgcatc 235  Q
    ||||||||||    
T  24175795 ctcttgcatc 24175786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 4852940 - 4852807
Alignment:
Q  146 agatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaa 245  Q
    |||| |||||||||| |  |||||||| || |||| ||| |||| || || |||||||| ||||||||||| || |  ||||| |||||| || ||||||    
T  4852940 agattgacaccacattttgatccaaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgtagaa 4852841  T
Q  246 gtttaactcacacacgacgcattaatatctctct 279  Q
    | |||||||||||| ||| |||||| ||||||||    
T  4852840 ggttaactcacacatgacacattaacatctctct 4852807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 34515077 - 34515221
Alignment:
Q  127 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaa-gatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    ||||||||||||| || | |||| |||| ||||||| ||  ||||||||||| || |||| ||||||||| |||||||||   |||||  ||||||||||    
T  34515077 aagagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggtcatctcacattcatgtttctcaatatata 34515176  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 270  Q
    || |||| |  || |||||||||||||| ||||| ||| ||||||    
T  34515177 cttttgctttcaatgtagaagtttaactgacacatgacacattaa 34515221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 7428507 - 7428587
Alignment:
Q  284 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  7428507 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 7428587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 24398048 - 24397914
Alignment:
Q  145 aagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtaga 244  Q
    ||||| |||| ||| ||| || |||||| || | || ||||| |||||| | |||||||   |||||||| ||||||||||||  | | || || |||||    
T  24398048 aagattgacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatactaattcgtctaatgtaga 24397949  T
Q  245 agtttaactcacacacgacgcattaatatctctctc 280  Q
    |||| |||||||||| ||| ||||||||||||||||    
T  24397948 agtt-aactcacacatgacacattaatatctctctc 24397914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 24360161 - 24360218
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacat 336  Q
    ||||||||||||||| |||  | |||| |||||||| ||||| |||||||||||||||    
T  24360161 tcaacatctactcttgcatccattgtggaactttaagtcaaaattgacacattaacat 24360218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 18090618 - 18090682
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatct 162  Q
    |||||||  |||||| |||||||| || ||||||||||||||||||| ||||  |||||| ||||    
T  18090618 tacaatgagttgaatcatcacatttgattaagagaaaccccacaagtgagatacacaccaaatct 18090682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 20874263 - 20874199
Alignment:
Q  278 ctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcc 342  Q
    |||||||||||   ||||||  ||||| || |||||| ||| |||||||||||||||||||||||    
T  20874263 ctcaacatctatatttacatctaatgtaaatctttaactcacatttgacacattaacatctctcc 20874199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 39047786 - 39047632
Alignment:
Q  114 atcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgtt 213  Q
    |||||||| || ||| ||||||  ||||||| ||||  ||||||| ||| |||||||||||| |  |||||||||||||||||||||||||| |||| ||    
T  39047786 atcacatttgactaaaagaaacatcacaagtgagatcaacaccacttcttcatccaaaacctcagcatattaggtatattggccatctcacatatatttt 39047687  T
Q  214 gttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 270  Q
      |||   |||||||||||||  || ||| || ||||||||||||| ||| ||||||    
T  39047686 tctca--gtatactcttgcatttaatgtaaaaatttaactcacacatgacacattaa 39047632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 31089445 - 31089615
Alignment:
Q  101 aatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaac-ctgaagatattaggtatattggccat 199  Q
    ||||| ||| || ||||||||  | ||||||||||| ||||||| |||| |||||||||||  || | ||||  ||  ||| |||||||||||||  |||    
T  31089445 aatgggttggatcatcacattttactaagagaaacctcacaagtgagattgacaccacatcctcaccaaaaaaacttcagacattaggtatattgatcat 31089544  T
Q  200 ctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaa 270  Q
    ||| |  |||||||| |||| |||||||||| |||| || |||||| ||||||| ||| | ||| ||||||    
T  31089545 ctcgcttatatgttgctcaaaatatactctttcatccaatgtagaaatttaacttacatatgacacattaa 31089615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 16853042 - 16852890
Alignment:
Q  127 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatac 226  Q
    |||||||| || ||| || |||| |||||||||||| |    ||||||| || | |||| ||||||| | |||||||||   |||||  |||||||||||    
T  16853042 aagagaaatccgacatgtgagattgacaccacatcttcccttaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 16852943  T
Q  227 tcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctct 279  Q
    | |||| || || |||||||||||||| ||||| ||| |||||| || |||||    
T  16852942 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctct 16852890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 20306755 - 20306835
Alignment:
Q  284 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  20306755 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 20306835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 40946583 - 40946503
Alignment:
Q  284 atctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||    
T  40946583 atctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgtcaggatctttgtg 40946503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 27342261 - 27342218
Alignment:
Q  216 tcaatatatactcttgcatcaaaagtagaagtttaactcacaca 259  Q
    |||||||||||| ||||||| || ||||||||||||||||||||    
T  27342261 tcaatatatactattgcatccaatgtagaagtttaactcacaca 27342218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 1992448 - 1992406
Alignment:
Q  322 ttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    |||||||||||||||||||||| ||||||||||  ||||||||    
T  1992448 ttgacacattaacatctctccattaagtgtcaggatctttgtg 1992406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 30001802 - 30001844
Alignment:
Q  322 ttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    |||||||||||||||||||||| ||||||||||  ||||||||    
T  30001802 ttgacacattaacatctctccattaagtgtcaggatctttgtg 30001844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 43386370 - 43386531
Alignment:
Q  110 aatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaata 209  Q
    |||||||||||| ||  ||||||||||||||| || | ||  |||||||||||  |  | |||||| ||||| ||  ||||||| | | ||||||| |||    
T  43386370 aatgatcacatttgaccaagagaaaccccacacgtgaaattcacaccacatctaaactcgaaaccttaagattttgtgtatattagtcttctcacatata 43386469  T
Q  210 tgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacacacgacgcattaat 271  Q
    ||||| ||||||| ||||||| |||  || | ||||||| || ||| ||| ||| |||||||    
T  43386470 tgttgctcaatatctactctttcatataatggagaagttgaaatcaaacatgacacattaat 43386531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 8313455 - 8313487
Alignment:
Q  327 acattaacatctctccagtaagtgtcagactct 359  Q
    ||||||||||||||||| |||||||||||||||    
T  8313455 acattaacatctctccattaagtgtcagactct 8313487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 43387115 - 43387179
Alignment:
Q  277 tctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctc 341  Q
    |||||||||||||| || |||  |||||| || ||||| ||| | ||||||||||||||||||||    
T  43387115 tctcaacatctactattgcattcaatgtgtaattttaactcacacttgacacattaacatctctc 43387179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 49879911 - 49879847
Alignment:
Q  300 aatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    |||||| |||||||| ||||| | ||||||||||||| ||| |  ||||||| ||||||||||||    
T  49879911 aatgtggaactttaagtcaaaatggacacattaacatatcttccttaagtgtaagactctttgtg 49879847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 6070 - 5937
Alignment:
Q  127 aagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagat-attaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    ||||||||||||| || | |||| |||||||||||| ||  ||||| |||||  | |||| |||||||||||||||||||   |||||  ||||||||||    
T  6070 aagagaaaccccaaaaattagattgacaccacatcttcactcaaaatctgaaattcattatgtatattggccatctcacattcatgtttctcaatatata 5971  T
Q  226 ctcttgcatcaaaagtagaagtttaactcacaca 259  Q
    || |||| |  || ||||||||||||||||||||    
T  5970 cttttgctttcaatgtagaagtttaactcacaca 5937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 12337 - 12225
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 225  Q
    ||||||||||||||| | | |||| | |||||||||| ||| ||||| || |||| || ||||||||||| ||||||||  |||||||| ||||||| ||    
T  12337 taagagaaaccccacgaatgagattgccaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatatgttgctcaatatcta 12238  T
Q  226 ctcttgcatcaaa 238  Q
    || |||| |||||    
T  12237 cttttgcgtcaaa 12225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 5220 - 5143
Alignment:
Q  282 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactct 359  Q
    |||||||||||| |||| ||||||||| ||||| | | | || | ||||||||||||||||| |||||||||||||||    
T  5220 acatctactcttgcatacaatgtgaaattttaacttacacttaaaacattaacatctctccattaagtgtcagactct 5143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 45555 - 45660
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 197  Q
    |||||||  |||||| |||||||| || ||||||||||||||||||| ||||  |||||| |||| || |||||| || |||| |||||||||||| | |    
T  45555 tacaatgagttgaatcatcacatttgattaagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtc 45654  T
Q  198 atctca 203  Q
    ||||||    
T  45655 atctca 45660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 153232 - 153127
Alignment:
Q  98 tacaatggattgaatgatcacattcgaataagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggcc 197  Q
    |||||||  |||||| |||||||| || ||||||||||||||||||| ||||  |||||| |||| || |||||| || |||| |||||||||||| | |    
T  153232 tacaatgagttgaatcatcacatttgattaagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtc 153133  T
Q  198 atctca 203  Q
    ||||||    
T  153132 atctca 153127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 126637 - 126581
Alignment:
Q  281 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 337  Q
    ||||| |||||||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  126637 aacatatactcttacataaaatttgaaactttaactcacacttgacacattaacatc 126581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 96635 - 96695
Alignment:
Q  282 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcc 342  Q
    |||| |||||||||||||||| ||||||||||| ||| | |||||||||||||||| ||||    
T  96635 acatatactcttacataaaatttgaaactttaactcacacttgacacattaacatcactcc 96695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 95949 - 96004
Alignment:
Q  225 actcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctctc 280  Q
    |||||||||||||| |||||||||||||||||||| ||  |||||| |||||||||    
T  95949 actcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctctc 96004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 2260826 - 2260882
Alignment:
Q  281 aacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatc 337  Q
    ||||| |||||||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  2260826 aacatatactcttacataaaatttgaaactttaactcacacttgacacattaacatc 2260882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 24541900 - 24541800
Alignment:
Q  159 atctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacac 258  Q
    |||| |||||||||||| || | | ||||||||||||  |||||||  |||| ||  ||| |||| ||||||||||| ||  || |||||||||||||||    
T  24541900 atcttcatccaaaaccttaacacagtaggtatattggttatctcacgtatatttttctcagtatacactcttgcatccaacataaaagtttaactcacac 24541801  T
Q  259 a 259  Q
    |    
T  24541800 a 24541800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 5221 - 5142
Alignment:
Q  177 aagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcac 256  Q
    |||| |||||||||||||| ||  ||||  |||||||||||||| |||| ||||||||| || ||||| |||||||||||    
T  5221 aagacattaggtatattggtcacttcacttatatgttgttcaatgtatattcttgcatccaatgtagatgtttaactcac 5142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 30971 - 30837
Alignment:
Q  145 aagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtaga 244  Q
    ||||| |||| ||| ||| || |||||| || | || ||||| |||||| | |||||||   |||||||| |||||||||||| | ||| | || |||||    
T  30971 aagattgacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactatcgcacctaatgtaga 30872  T
Q  245 agtttaactcacacacgacgcattaatatctctctc 280  Q
    |||| |||||||||| ||| ||||||||||||||||    
T  30871 agtt-aactcacacatgacacattaatatctctctc 30837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 87 - 10
Alignment:
Q  182 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 259  Q
    |||||||||||||  | |||| |  |||||||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  87 attaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacaca 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 10567 - 10663
Alignment:
Q  126 taagagaaaccccacaagtaagatggacaccacatctgcatccaaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatat 222  Q
    |||||||||||| |||||| |||| ||||| |||||| ||||||||| || | || ||| ||||| || | ||||||||  |||||||| |||||||    
T  10567 taagagaaaccctacaagtgagattgacactacatcttcatccaaaaacttaggacatttggtatgttcgtcatctcacttatatgttgctcaatat 10663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 32460 - 32531
Alignment:
Q  187 gtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacac 258  Q
    ||||||| | ||||||||  |||||||| ||||||||||||||| |||  || |||||||||||| ||||||    
T  32460 gtatatttgtcatctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacac 32531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 33262 - 33347
Alignment:
Q  279 tcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    |||||||||||| || |||  ||||||  | ||||| ||| ||||||||||||||||||||| || ||||| | ||||||| ||||    
T  33262 tcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtg 33347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 1914 - 1832
Alignment:
Q  282 acatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 364  Q
    ||||||||| || |||| ||| | ||| ||||| ||| | |||||||||||||||||||| | ||||||||||  ||||||||    
T  1914 acatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagtgtcaggatctttgtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 594 - 530
Alignment:
Q  278 ctcaacatctactcttacataaaatgtgaaactttaattcaaatttgacacattaacatctctcc 342  Q
    |||||||||||   ||||||  ||||| || |||||| ||| |||||||||||||||||||||||    
T  594 ctcaacatctatatttacatctaatgtaaatctttaactcacatttgacacattaacatctctcc 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 12546 - 12637
Alignment:
Q  188 tatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagta--gaagtttaactcacacacgacgcattaatatctct 277  Q
    |||||||  ||||||||  | |||||| ||||||| |||||||||||| || |||  ||| ||||||||||||| ||| |||||| ||||||    
T  12546 tatattgatcatctcacttacatgttgctcaatatttactcttgcatctaatgtatagaaatttaactcacacatgacacattaacatctct 12637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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