View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12314_high_1 (Length: 583)
Name: NF12314_high_1
Description: NF12314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12314_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 93 - 574
Target Start/End: Original strand, 12343978 - 12344459
Alignment:
| Q |
93 |
gaagatgaaatggatttggggttttggaaaagagctttggattcaagaaactctttatcatcatcaatggcttcttctaaaactgataattactcttttg |
192 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12343978 |
gaagaagaaatggatttggggttttggaaaagagctttggattcaagaaactctttatcatcatcaatggcttcttctaaaactgataattactcttttg |
12344077 |
T |
|
| Q |
193 |
acctctctctttcaaatccaacaaagcctttggattcaaacaacaacacttcaaataacctcattcatcatcatcacttccaaaatagtggaaataataa |
292 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344078 |
acctctctctttcaaatccaacaaagcctttagattcaaacaacaacacttcaaataacctcattcatcatcatcacttccaaaatagtggaaataataa |
12344177 |
T |
|
| Q |
293 |
tgcaaacaacccttatcaatcttttcatcaaaataattactttcaacacccccatccccaaccactctttcaacaccaccagccacatcaacaacaccaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344178 |
tgcaaacaacccttatcaatcttttcatcaaaataattactttcaacacccccatccccaaccactctttcaacaccaccagccacatcaacaacaccaa |
12344277 |
T |
|
| Q |
393 |
agcttaagccaagaacttggttttcttagacctattagaggaattcctgtttatcaaaaccctcctcctttgtcattccctcaacttcataatcataatc |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344278 |
agcttaagccaagaacttggttttcttagacctattagaggaattcctgtttatcaaaaccctcctcctttgtcattccctcaacttcataatcataatc |
12344377 |
T |
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| Q |
493 |
ataatctaaatcatcttcatattctagatggtactactactactacaccttcttcaatttctaacaccaacaacacaggttc |
574 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
12344378 |
ataatctaaatcatcttcatattttagatggtactactactactacaccttcttctatttctaacaccaacaacacaagttc |
12344459 |
T |
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