View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12314_high_5 (Length: 288)
Name: NF12314_high_5
Description: NF12314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12314_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 11744113 - 11744373
Alignment:
| Q |
9 |
gaacctgtgaagcatgaacactccttagatttagcgtatttcggtgtgggatatgtatcgtttctaacaccgacacaattcggacacatataattatagt |
108 |
Q |
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| T |
11744113 |
gaacctatgaagtatgaacactccttagatttagcgcatttcggtgtgggatatgtatcgtttctgacaccgacacaatacagacacatataattacact |
11744212 |
T |
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| Q |
109 |
gaattatgcaattttcttattaatggtatcggcatattagtgttggtgtcgtgtttgatgtctgtgtttatattcgtggttctcagatctgaaccatatt |
208 |
Q |
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| T |
11744213 |
gaattatacaattttcttattaatggtatcgatgtattagtgttgatgtcgcgtctgatgtctgtgtctatattcatgcgtctcaaatctgaagcatatt |
11744312 |
T |
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| Q |
209 |
tgattaattatcatgtttacttcagtatagtatatggttgcaaaatcttgctagttcacgt |
269 |
Q |
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| T |
11744313 |
taattaattatcatgtttacttcaatatagtatatggttgcaaaatcttgctagttcacgt |
11744373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 22484077 - 22484043
Alignment:
| Q |
91 |
gacacatataattatagtgaattatgcaattttct |
125 |
Q |
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| T |
22484077 |
gacacatataattatactgaattatgcaattttct |
22484043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 14721292 - 14721257
Alignment:
| Q |
92 |
acacatataattatagtgaattatgcaattttctta |
127 |
Q |
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| T |
14721292 |
acacatataattatagtgaattatgtaattttctta |
14721257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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