View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12314_low_11 (Length: 207)
Name: NF12314_low_11
Description: NF12314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12314_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15160231 - 15160424
Alignment:
| Q |
1 |
acaactgttacattacacatttcactaccaatggaattttagtccaaagtggccatgaaacatacataagaaactctttccttggccagcacataactgc |
100 |
Q |
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| T |
15160231 |
acaattgttacattacacatttcactaccaatggaattttagtccaaagtggccatgaaacatacataagaaactctttccttggccagcacataactgc |
15160330 |
T |
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| Q |
101 |
cggtggcgataaaaacgaaaggaatttctcaggcacaggaataaacatccaaggtaacgataatgctgtcaccgatgttgtaattttctctgct |
194 |
Q |
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| T |
15160331 |
cggaggcgataaaaacgaaaggaatttctcaggcacaggaataaacatccaaggtaacgataatgctgtcaccgatgttgtaattttctctgct |
15160424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5460835 - 5460701
Alignment:
| Q |
1 |
acaactgttacattacacatttcactaccaatggaattttagtccaaagtggccatgaaacatacataagaaactctttccttggccagcacataactgc |
100 |
Q |
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|||| |||||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||| || ||||||||||| |
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| T |
5460835 |
acaattgttacatcacacatttcatcacaaatggaattttagtccaaagtggtcatgaaacatacattagaaacactttcattggtcaacacataactgc |
5460736 |
T |
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| Q |
101 |
cggtggcgataaaaacgaaaggaatttctcaggca |
135 |
Q |
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|| || || ||||| ||||| || || ||||||| |
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| T |
5460735 |
aggaggtgacaaaaatgaaagaaaattttcaggca |
5460701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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