View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12314_low_5 (Length: 473)

Name: NF12314_low_5
Description: NF12314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12314_low_5
NF12314_low_5
[»] scaffold0026 (2 HSPs)
scaffold0026 (13-352)||(12534-12872)
scaffold0026 (363-458)||(12437-12543)
[»] scaffold0634 (1 HSPs)
scaffold0634 (13-423)||(2747-3156)
[»] chr2 (18 HSPs)
chr2 (13-455)||(26582856-26583313)
chr2 (13-351)||(23168954-23169294)
chr2 (13-351)||(23580211-23580551)
chr2 (239-424)||(23089594-23089779)
chr2 (124-383)||(23062869-23063127)
chr2 (239-452)||(23101994-23102207)
chr2 (316-416)||(23878325-23878425)
chr2 (312-427)||(21907750-21907865)
chr2 (222-373)||(26884489-26884639)
chr2 (239-384)||(24660876-24661021)
chr2 (321-458)||(5706610-5706759)
chr2 (312-414)||(29281368-29281470)
chr2 (288-395)||(25181501-25181606)
chr2 (363-461)||(23264515-23264613)
chr2 (321-414)||(9957-10050)
chr2 (124-352)||(23264301-23264524)
chr2 (312-384)||(27208322-27208394)
chr2 (312-384)||(27210657-27210729)
[»] chr6 (26 HSPs)
chr6 (13-455)||(29614738-29615195)
chr6 (98-427)||(25396343-25396671)
chr6 (244-422)||(18799754-18799932)
chr6 (239-424)||(21565751-21565936)
chr6 (274-458)||(12167637-12167832)
chr6 (274-458)||(19286546-19286741)
chr6 (14-130)||(19786751-19786866)
chr6 (274-414)||(19877730-19877870)
chr6 (274-458)||(19883506-19883701)
chr6 (14-130)||(12167420-12167535)
chr6 (14-130)||(19877513-19877628)
chr6 (14-130)||(19883289-19883404)
chr6 (222-424)||(19300308-19300509)
chr6 (274-395)||(19786529-19786650)
chr6 (14-130)||(19286329-19286444)
chr6 (321-458)||(34640575-34640724)
chr6 (321-458)||(34647249-34647398)
chr6 (247-416)||(19471914-19472082)
chr6 (363-458)||(24513370-24513465)
chr6 (321-414)||(20008529-20008622)
chr6 (312-458)||(25470290-25470448)
chr6 (334-456)||(21365067-21365200)
chr6 (334-456)||(23969049-23969182)
chr6 (407-458)||(19786455-19786506)
chr6 (407-456)||(19877874-19877923)
chr6 (289-352)||(9186841-9186903)
[»] chr3 (18 HSPs)
chr3 (14-414)||(41455741-41456142)
chr3 (17-416)||(18914193-18914590)
chr3 (312-452)||(55499658-55499798)
chr3 (312-422)||(16802029-16802139)
chr3 (221-403)||(13324381-13324562)
chr3 (322-455)||(24192274-24192418)
chr3 (82-139)||(18136117-18136174)
chr3 (221-352)||(13302844-13302974)
chr3 (221-352)||(13313520-13313650)
chr3 (82-135)||(18129607-18129660)
chr3 (312-414)||(14865216-14865319)
chr3 (408-457)||(10390034-10390083)
chr3 (408-457)||(10415123-10415172)
chr3 (408-457)||(10421793-10421842)
chr3 (357-422)||(12034007-12034072)
chr3 (17-73)||(18136249-18136306)
chr3 (87-191)||(9533232-9533335)
chr3 (17-72)||(18129736-18129792)
[»] scaffold0029 (4 HSPs)
scaffold0029 (13-352)||(110939-111284)
scaffold0029 (316-414)||(91783-91881)
scaffold0029 (316-414)||(97509-97607)
scaffold0029 (407-455)||(111330-111378)
[»] scaffold0456 (4 HSPs)
scaffold0456 (185-352)||(241-407)
scaffold0456 (185-352)||(7386-7552)
scaffold0456 (374-458)||(409-504)
scaffold0456 (374-458)||(7554-7649)
[»] chr7 (28 HSPs)
chr7 (13-455)||(13123506-13123967)
chr7 (149-414)||(13742860-13743121)
chr7 (13-405)||(12710496-12710896)
chr7 (239-461)||(16676623-16676845)
chr7 (239-461)||(17650859-17651081)
chr7 (13-130)||(13742686-13742803)
chr7 (274-458)||(13006706-13006901)
chr7 (145-383)||(46625166-46625403)
chr7 (124-383)||(13678649-13678906)
chr7 (312-422)||(11389910-11390020)
chr7 (14-130)||(13006489-13006604)
chr7 (338-416)||(20311631-20311709)
chr7 (323-458)||(12591230-12591377)
chr7 (289-404)||(11383440-11383554)
chr7 (312-414)||(16090457-16090559)
chr7 (312-384)||(14320243-14320315)
chr7 (87-178)||(18607248-18607339)
chr7 (338-427)||(21231554-21231643)
chr7 (87-191)||(147453-147556)
chr7 (334-414)||(2464758-2464838)
chr7 (334-414)||(3858007-3858087)
chr7 (407-456)||(3857953-3858003)
chr7 (87-141)||(16475929-16475983)
chr7 (324-414)||(29181690-29181780)
chr7 (357-405)||(2966383-2966431)
chr7 (407-455)||(12710435-12710483)
chr7 (82-126)||(13318007-13318051)
chr7 (357-405)||(20907038-20907086)
[»] chr4 (15 HSPs)
chr4 (13-458)||(8046420-8046893)
chr4 (338-461)||(15407485-15407608)
chr4 (322-424)||(14486052-14486154)
chr4 (82-139)||(14555881-14555938)
chr4 (233-373)||(11847397-11847537)
chr4 (221-284)||(14485975-14486037)
chr4 (321-458)||(53483022-53483171)
chr4 (312-414)||(16147412-16147514)
chr4 (239-351)||(8834185-8834297)
chr4 (288-405)||(27905613-27905729)
chr4 (291-383)||(15244566-15244658)
chr4 (90-191)||(18212523-18212623)
chr4 (241-413)||(13887086-13887258)
chr4 (241-413)||(13887943-13888115)
chr4 (239-383)||(15307415-15307563)
[»] scaffold0117 (1 HSPs)
scaffold0117 (13-455)||(9167-9628)
[»] chr8 (13 HSPs)
chr8 (13-414)||(23865615-23866026)
chr8 (13-130)||(19902808-19902924)
chr8 (338-461)||(14057148-14057271)
chr8 (338-461)||(25111385-25111508)
chr8 (84-139)||(19987990-19988045)
chr8 (124-416)||(18613409-18613697)
chr8 (288-414)||(24321252-24321376)
chr8 (239-408)||(21931018-21931187)
chr8 (407-458)||(17054009-17054060)
chr8 (88-138)||(20005423-20005473)
chr8 (17-66)||(20005563-20005612)
chr8 (14-105)||(17053780-17053870)
chr8 (407-455)||(23866030-23866078)
[»] scaffold1773 (2 HSPs)
scaffold1773 (145-414)||(324-592)
scaffold1773 (13-130)||(153-269)
[»] scaffold0247 (1 HSPs)
scaffold0247 (239-458)||(10610-10829)
[»] scaffold0249 (2 HSPs)
scaffold0249 (82-233)||(7517-7667)
scaffold0249 (17-73)||(7742-7798)
[»] scaffold0154 (1 HSPs)
scaffold0154 (234-423)||(30194-30383)
[»] scaffold0053 (2 HSPs)
scaffold0053 (126-383)||(81826-82082)
scaffold0053 (312-414)||(80072-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (124-440)||(116052-116366)
scaffold0004 (239-427)||(129204-129393)
[»] scaffold0028 (2 HSPs)
scaffold0028 (99-427)||(65265-65592)
scaffold0028 (145-207)||(1274-1336)
[»] chr5 (20 HSPs)
chr5 (14-458)||(23527632-23528099)
chr5 (82-139)||(22232436-22232493)
chr5 (252-416)||(18408521-18408685)
chr5 (334-414)||(19236294-19236374)
chr5 (363-422)||(22439310-22439369)
chr5 (288-395)||(22460506-22460611)
chr5 (288-396)||(34829432-34829539)
chr5 (288-414)||(22467130-22467254)
chr5 (296-387)||(20781102-20781192)
chr5 (124-191)||(23112480-23112546)
chr5 (408-458)||(20819639-20819689)
chr5 (408-458)||(20826739-20826789)
chr5 (17-73)||(22232568-22232625)
chr5 (237-269)||(20819456-20819488)
chr5 (237-269)||(20826556-20826588)
chr5 (334-414)||(28889978-28890058)
chr5 (334-414)||(28896682-28896762)
chr5 (334-414)||(28909930-28910010)
chr5 (334-414)||(28931622-28931702)
chr5 (334-414)||(28946325-28946405)
[»] scaffold0461 (2 HSPs)
scaffold0461 (289-461)||(581-752)
scaffold0461 (289-373)||(7605-7688)
[»] scaffold0139 (1 HSPs)
scaffold0139 (124-462)||(15521-15856)
[»] scaffold0025 (1 HSPs)
scaffold0025 (322-455)||(14977-15121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (239-383)||(1117-1261)
[»] chr1 (15 HSPs)
chr1 (289-461)||(18712098-18712270)
chr1 (274-414)||(41111214-41111354)
chr1 (82-139)||(20941657-20941714)
chr1 (14-130)||(41110997-41111112)
chr1 (288-414)||(21710167-21710292)
chr1 (222-373)||(19961472-19961622)
chr1 (239-410)||(22030333-22030504)
chr1 (288-414)||(20851714-20851838)
chr1 (288-414)||(21705625-21705749)
chr1 (321-414)||(20858341-20858434)
chr1 (124-352)||(11157328-11157554)
chr1 (87-191)||(20438224-20438327)
chr1 (17-72)||(23631145-23631200)
chr1 (17-73)||(20941789-20941846)
chr1 (407-456)||(41111358-41111407)
[»] scaffold0124 (1 HSPs)
scaffold0124 (312-461)||(34861-35010)
[»] scaffold0235 (2 HSPs)
scaffold0235 (289-448)||(15475-15633)
scaffold0235 (312-448)||(23192-23328)
[»] scaffold1061 (1 HSPs)
scaffold1061 (145-352)||(1607-1813)
[»] scaffold0317 (1 HSPs)
scaffold0317 (124-383)||(542-799)
[»] scaffold0310 (1 HSPs)
scaffold0310 (338-455)||(6907-7024)
[»] scaffold0077 (3 HSPs)
scaffold0077 (324-452)||(4153-4281)
scaffold0077 (82-134)||(17972-18024)
scaffold0077 (82-134)||(23605-23657)
[»] scaffold0222 (1 HSPs)
scaffold0222 (252-416)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (288-414)||(4253-4377)
[»] scaffold0020 (1 HSPs)
scaffold0020 (124-424)||(102489-102787)
[»] scaffold0001 (3 HSPs)
scaffold0001 (13-130)||(174440-174557)
scaffold0001 (222-373)||(493650-493800)
scaffold0001 (239-383)||(525062-525205)
[»] scaffold0348 (2 HSPs)
scaffold0348 (82-139)||(1527-1584)
scaffold0348 (17-73)||(1659-1716)
[»] scaffold0476 (1 HSPs)
scaffold0476 (312-416)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (265-416)||(17492-17643)
[»] scaffold0261 (1 HSPs)
scaffold0261 (222-387)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (239-408)||(121200-121369)
scaffold0031 (239-408)||(132077-132246)
[»] scaffold0232 (1 HSPs)
scaffold0232 (239-346)||(19059-19166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (222-405)||(72565-72747)
[»] scaffold0107 (1 HSPs)
scaffold0107 (338-461)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (247-352)||(51552-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (222-373)||(11631-11782)
[»] scaffold0720 (1 HSPs)
scaffold0720 (288-423)||(3831-3966)
[»] scaffold0337 (1 HSPs)
scaffold0337 (87-191)||(9950-10053)
[»] scaffold0453 (1 HSPs)
scaffold0453 (222-351)||(11196-11324)
[»] scaffold0206 (1 HSPs)
scaffold0206 (312-373)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (239-283)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (124-191)||(1207-1273)
[»] scaffold0106 (2 HSPs)
scaffold0106 (17-79)||(46685-46748)
scaffold0106 (17-79)||(50958-51021)
[»] scaffold0023 (2 HSPs)
scaffold0023 (357-414)||(134867-134924)
scaffold0023 (288-352)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (407-455)||(1343-1391)
[»] scaffold0335 (1 HSPs)
scaffold0335 (239-283)||(3328-3372)
[»] scaffold0006 (1 HSPs)
scaffold0006 (407-455)||(49597-49645)


Alignment Details
Target: scaffold0026 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 12872 - 12534
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  12872 aacctgtgtatatctacatacaactcaactacacatatatctcatatgacttactactccgagagttctaacaatccagaacatacacaattaattataa 12773  T
Q  113 ttatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 212  Q
    |||||| ||||||||||||||||||||||  ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||     
T  12772 ttatgcgcatacatcaatttcattcaatag-ttatacattcacttgatttcttactcaatcatctccaaaattcactaacatcaaccaattcgatcaccg 12674  T
Q  213 gcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaat 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  12673 gcttgttctagtaggattctgatacctatacaagggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagt 12574  T
Q  313 tcaaaaagaggctgactaaggctcacttcgcttaagcgac 352  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  12573 tcagaaagaggctgactaaggctcacttcgcttaagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 12543 - 12437
Alignment:
Q  363 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct-----------tgagcgaacttctaacagaatcaaaacggtttttcgc 451  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||||           ||||||||||||| |||||||||||| ||||||||||    
T  12543 cttaagcgaccggcttacagtaggtctgggttcagctcgcttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgc 12444  T
Q  452 tcacagg 458  Q
    |||||||    
T  12443 tcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 2747 - 3156
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||| || | | |||||||||||||||| ||||||| |||||    
T  2747 aacctgtgtatatctacatacaactcaactaatacatatgtttcatatgacttactactccgcaact-caaacaatccagaacatagacaattatttata 2845  T
Q  112 attatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacc 211  Q
    ||||||| |||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  2846 attatgcgcatacatcaaattcattcaataa-ttatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaaccaattcgatcacc 2944  T
Q  212 agcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaa 311  Q
     |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  2945 ggcttgttctagtgggattctggtacctatacaagggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaag 3044  T
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||  ||||||| |  ||||    
T  3045 ttcagaaagaggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcgctcacagttc 3144  T
Q  412 gcttgagcgaac 423  Q
    ||||||||||||    
T  3145 gcttgagcgaac 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 455
Target Start/End: Original strand, 26582856 - 26583313
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    |||||||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||| || | | |||||||||||||||||||||||| |||||    
T  26582856 aacctgtgtatatctacatacaacttaactattacatatgttttatatgacttactactccgcaact-caaacaatccagaacatacacaattatttata 26582954  T
Q  112 attatgcacatacatcaatttcattcaataaattat----atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgat 207  Q
    ||||||| |||||||||||  ||||| | |  ||||    ||||||||| ||||||||||||||||||||| || ||| ||||||| ||| |||||||||    
T  26582955 attatgcgcatacatcaatcacattccacatgttatgtatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatcaattcgat 26583054  T
Q  208 caccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagca 307  Q
    |||| ||| |||||| ||||| || | |||||| || |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||    
T  26583055 caccggctagttctaataggagtcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcctgcacgaaaca 26583154  T
Q  308 aaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt--- 404  Q
    ||| |||| ||  |||||||||||| || |||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| ||||||||       
T  26583155 aaagttcagaagaaggctgactaagacttacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttacg 26583254  T
Q  405 --------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
            | ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26583255 ggtcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 23169294 - 23168954
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    |||| ||||||||| ||||||||||  ||||  ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||    
T  23169294 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttata 23169196  T
Q  112 attatgcacatacatcaatttcattcaataaattatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatca 209  Q
    ||||||| ||||||||| |  ||||| | |  ||||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||    
T  23169195 attatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatca 23169096  T
Q  210 ccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaa 308  Q
    ||||  |||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | |    
T  23169095 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-a 23168997  T
Q  309 aaattcaaaaagaggctgactaaggctcacttcgcttaagcga 351  Q
    |  |||| |||||||||||||||| ||||  ||||||||||||    
T  23168996 attttcagaaagaggctgactaagcctcagctcgcttaagcga 23168954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 23580551 - 23580211
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    |||| ||||||||| ||||||||||  ||||  ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||    
T  23580551 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttata 23580453  T
Q  112 attatgcacatacatcaatttcattcaataaattatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatca 209  Q
    ||||||| ||||||||| |  ||||| | |  ||||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||    
T  23580452 attatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatca 23580353  T
Q  210 ccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaa 308  Q
    ||||  |||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | |    
T  23580352 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-a 23580254  T
Q  309 aaattcaaaaagaggctgactaaggctcacttcgcttaagcga 351  Q
    |  |||| |||||||||||||||| ||||  ||||||||||||    
T  23580253 attttcagaaagaggctgactaagcctcagctcgcttaagcga 23580211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 424
Target Start/End: Complemental strand, 23089779 - 23089594
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23089779 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23089681  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 424  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  23089680 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 23089594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 383
Target Start/End: Original strand, 23062869 - 23063127
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttct-a 222  Q
    |||||| ||||||||| | | ||||| |||||| | ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   |||| | |    
T  23062869 catcaagttcattcaacatagtatatgttcactaggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgttttca 23062967  T
Q  223 gtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaaga 321  Q
    ||||||||| | |   |||| |||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  |||||||||     
T  23062968 gtaggattcag-tgtatatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagt 23063065  T
Q  322 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
    ||||||||||||   |||||||||||||||| | | |||| |||||||||||||||||||||    
T  23063066 ggctgactaaggtcaacttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 23063127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 239 - 452
Target Start/End: Complemental strand, 23102207 - 23101994
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23102207 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23102109  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    |||||||||||||||    ||||| |||||| || |||||||||| | |||||||||||||||||||| ||||||||| ||||||||  |  ||||||||    
T  23102108 cttcgcttaagcgacgtccagttcgcttaagtgatcggcttacagtaagtctgggttctgctcgcttacggttcgcttaagcgaactcttggcagaatca 23102009  T
Q  438 aaacggtttttcgct 452  Q
    ||  |||||||||||    
T  23102008 aattggtttttcgct 23101994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 416
Target Start/End: Original strand, 23878325 - 23878425
Alignment:
Q  316 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    ||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  23878325 aaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 23878423  T
Q  415 tg 416  Q
    ||    
T  23878424 tg 23878425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 427
Target Start/End: Original strand, 21907750 - 21907865
Alignment:
Q  312 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 410  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||  |||||| ||||||| | ||||    
T  21907750 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggtt 21907848  T
Q  411 cgcttgagcgaacttct 427  Q
    ||||| |||||||||||    
T  21907849 cgcttaagcgaacttct 21907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 373
Target Start/End: Original strand, 26884489 - 26884639
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 320  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||||    
T  26884489 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaag 26884586  T
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  26884587 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 26884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 384
Target Start/End: Original strand, 24660876 - 24661021
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||  ||||||||||||| ||||||||||| |       
T  24660876 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaag-taaaattcaaaaagtggctgactaagacctt 24660974  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 384  Q
    ||| ||||||||||| | | | || ||||||||||||||| ||||||    
T  24660975 ctttgcttaagcgacggctggctcgcttaagcgaccggctcacagaa 24661021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 5706759 - 5706610
Alignment:
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 408  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  5706759 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 5706660  T
Q  409 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  5706659 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 414
Target Start/End: Original strand, 29281368 - 29281470
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || ||    
T  29281368 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtc 29281467  T
Q  412 gct 414  Q
    |||    
T  29281468 gct 29281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 25181606 - 25181501
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||||||||||||| | |||| ||| |||||||||||  |||| |||||||||||||| | |||||  ||||||||||| |||||||| ||||    
T  25181606 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacactcagttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggt 25181509  T
Q  388 ctgggttc 395  Q
    ||||||||    
T  25181508 ctgggttc 25181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 461
Target Start/End: Original strand, 23264515 - 23264613
Alignment:
Q  363 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 461  Q
    |||||||||||||||||||||  ||| |||||  ||||||| | ||||||||||||||||||||| ||| ||| |||| | ||||||||| || |||||    
T  23264515 cttaagcgaccggcttacagagagtcggggtttcgctcgctaacggttcgcttgagcgaacttctgacataatgaaaatgatttttcgcttacgggttc 23264613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 414
Target Start/End: Original strand, 9957 - 10050
Alignment:
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||||| ||||  |||| || ||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  9957 aggctgtctaacactcagtttgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 352
Target Start/End: Original strand, 23264301 - 23264524
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||| |||||||| ||| ||||||||  ||||| |||||||| ||||   |||| | |    
T  23264301 catcaagttcattcaacatagtatatgttcacttggtttcatactcgatcatctccaaa-ttcactaaactcaactaattcgattacca-agtgttttgg 23264398  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    |||||||  |     |||| || ||||||||||||| || | ||||||| | ||||||||| | | |||||| |||||||| || ||| ||||||||| |    
T  23264399 taggatttag---tgtatataaaggttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggc-aaagttcaaaaagtg 23264494  T
Q  323 gctgactaaggctca-cttcgcttaagcgac 352  Q
    ||||||||||| ||| |||||||||||||||    
T  23264495 gctgactaagg-tcatcttcgcttaagcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 27208394 - 27208322
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 384  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27208394 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 27210729 - 27210657
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 384  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27210729 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 5e-94; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 29615195 - 29614738
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    |||||||||||||||||||||||||  ||||  |||||| |||||||||||||||| ||||| || |   |||||||||||||||||||||||| |||||    
T  29615195 aacctgtgtatatctacatacaactcgactattacatatgtttcatatgacttactgctccgcaactc--aacaatccagaacatacacaattatttata 29615098  T
Q  112 attatgcacatacatcaatttcattcaataaattatatat--------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaatt 203  Q
    ||||| |||||||||||||  ||||| | |  ||||||||        ||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||    
T  29615097 attattcacatacatcaatcacattccacatgttatatatacacatattcacttgttttcatactcaatcatctccaacatttactaacaccaatcaatt 29614998  T
Q  204 cgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacga 303  Q
    | |||||| ||| |||||| || ||||||| ||||||| | |||||||||| |||||||||||| ||| ||||||||||||||||| ||||| |||||||    
T  29614997 caatcaccggctcgttctaataagattctgttacctatgccagggttatactagttaaaggaaatattatagaatgctcaagaagttccctcatgcacga 29614898  T
Q  304 agcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgct 403  Q
    | ||||| |||| |   |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||| |||||||||||| |||||||    
T  29614897 aacaaaagttcaga---aggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgct 29614801  T
Q  404 t-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |           | ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  29614800 tacgggttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 98 - 427
Target Start/End: Original strand, 25396343 - 25396671
Alignment:
Q  98 cacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaa 197  Q
    |||||||||| ||||| || |  || |||||| |||||||||   | |||||||||||||| |||||||||||||||| || ||||||||||||  ||||    
T  25396343 cacaattaataataatcatactaatgcatcaagttcattcaacctagtatatattcacttggtttcatactcaatcatatccaaaattcactaaattcaa 25396442  T
Q  198 ccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcg 296  Q
    |||||||||| ||||   ||||  |||||||||| | | | ||||||||||||||||||||| || ||||||||||||||||||||| | | | |||| |    
T  25396443 ccaattcgattaccaatgtgtttcagtaggattcag-tgcatatacaagggttatacaagttgaaagaaacattttagaatgctcaaaaggattccctag 25396541  T
Q  297 tgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct 396  Q
    ||||| |||| | ||||||||||| || |||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||  ||  ||||||     
T  25396542 tgcactaagc-ataattcaaaaagtggttgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttggggttcc 25396640  T
Q  397 gctcgcttagggttcgcttgagcgaacttct 427  Q
    ||||||| | ||||||||| || ||||||||    
T  25396641 gctcgctaacggttcgcttaagtgaacttct 25396671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 244 - 422
Target Start/End: Original strand, 18799754 - 18799932
Alignment:
Q  244 aagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcg 342  Q
    |||||||||||||||| || | ||||| || ||||||| || | | ||||||  |||| || |||||  ||||||||| |||||||||||| | ||||||    
T  18799754 aagggttatacaagttgaaaggaacatgtttgaatgctaaaaagggtcccctaatgcatgaggcaaag-ttcaaaaagtggctgactaaggttgacttcg 18799852  T
Q  343 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 422  Q
    |||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||| ||||||||| ||||||    
T  18799853 cttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggttcgcttaagcgaa 18799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 424
Target Start/End: Complemental strand, 21565936 - 21565751
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | || |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  21565936 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 21565838  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 424  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  21565837 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 21565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 458
Target Start/End: Original strand, 12167637 - 12167832
Alignment:
Q  274 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  12167637 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 12167735  T
Q  374 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  12167736 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 12167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 458
Target Start/End: Original strand, 19286546 - 19286741
Alignment:
Q  274 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19286546 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19286644  T
Q  374 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19286645 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19286741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 19786866 - 19786751
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  ||||| |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19786866 acctgtgtatatctacatacaactcgactactacatatgtatcatatgacttactactcc-ataactcaaacaatccaga-cttacacaattatttataa 19786769  T
Q  113 ttatgcacatacatcaat 130  Q
    ||||||||||||||||||    
T  19786768 ttatgcacatacatcaat 19786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 414
Target Start/End: Original strand, 19877730 - 19877870
Alignment:
Q  274 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19877730 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19877828  T
Q  374 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 414  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  19877829 agcttacagtaggttctgggttcagttcgcttacgggtcgct 19877870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 458
Target Start/End: Original strand, 19883506 - 19883701
Alignment:
Q  274 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||| | ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19883506 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19883604  T
Q  374 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19883605 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 12167420 - 12167535
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  12167420 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 12167517  T
Q  113 ttatgcacatacatcaat 130  Q
    ||||||||||||||||||    
T  12167518 ttatgcacatacatcaat 12167535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 19877513 - 19877628
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19877513 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 19877610  T
Q  113 ttatgcacatacatcaat 130  Q
    ||||||||||||||||||    
T  19877611 ttatgcacatacatcaat 19877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 19883289 - 19883404
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19883289 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 19883386  T
Q  113 ttatgcacatacatcaat 130  Q
    ||||||||||||||||||    
T  19883387 ttatgcacatacatcaat 19883404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 424
Target Start/End: Complemental strand, 19300509 - 19300308
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 320  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||||| || | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19300509 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19300412  T
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct-gctcgcttagggttcgcttgagc 419  Q
    |||||||||||||||||  ||||||||||||  | ||| || ||||||||||| || ||||| | || ||| |||| ||||||| | |||||||| ||||    
T  19300411 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctcgctcgctcacggttcgctcgagc 19300313  T
Q  420 gaact 424  Q
    |||||    
T  19300312 gaact 19300308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 19786650 - 19786529
Alignment:
Q  274 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||||||||||||||||| ||||  |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19786650 agaacgctcaagaagtcccctcatgcattaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19786552  T
Q  374 ggcttacagaagg-tctgggttc 395  Q
     |||||||| ||| |||||||||    
T  19786551 agcttacagtaggttctgggttc 19786529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 19286329 - 19286444
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  || || |||||| | | ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19286329 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 19286426  T
Q  113 ttatgcacatacatcaat 130  Q
    ||||||||||||||||||    
T  19286427 ttatgcacatacatcaat 19286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 34640724 - 34640575
Alignment:
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 408  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34640724 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34640625  T
Q  409 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34640624 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 34647398 - 34647249
Alignment:
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 408  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34647398 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34647299  T
Q  409 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34647298 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 416
Target Start/End: Complemental strand, 19472082 - 19471914
Alignment:
Q  247 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 345  Q
    ||||||||||||| |||||||||||| | ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||| ||| |   ||||||||    
T  19472082 ggttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgac-aagaccttcttcgctt 19471985  T
Q  346 aagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 416  Q
    ||||||  | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | || |||||||    
T  19471984 aagcgatggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggctcgcttg 19471914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 24513465 - 24513370
Alignment:
Q  363 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    ||||||||||||||| |||||| || ||||||| ||||||| | |||||||||||||||||||||   ||||| |||| | ||||||||| |||||    
T  24513465 cttaagcgaccggctcacagaaagtttgggttccgctcgctaacggttcgcttgagcgaacttctggaagaatgaaaatgatttttcgcttacagg 24513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 414
Target Start/End: Complemental strand, 20008622 - 20008529
Alignment:
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||||| ||||  |||| ||||||||||| || | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20008622 aggctgtctaacactcagttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20008529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 458
Target Start/End: Complemental strand, 25470448 - 25470290
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt------ 404  Q
    |||| ||| ||||||||||||| ||||||||||||||||||   |||||| |||||||||||  ||||||| ||| |||||| || | ||||||          
T  25470448 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacgggt 25470349  T
Q  405 -----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
         | |||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  25470348 cgctcacggttcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 456
Target Start/End: Complemental strand, 21365200 - 21365067
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 422  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  21365200 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 21365101  T
Q  423 cttctaacagaatcaaaacggtttttcgctcaca 456  Q
    |||   |||||||||||| |||||||||||||||    
T  21365100 ctttggacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 456
Target Start/End: Complemental strand, 23969182 - 23969049
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 422  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  23969182 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 23969083  T
Q  423 cttctaacagaatcaaaacggtttttcgctcaca 456  Q
    |||   |||||||||||| |||||||||||||||    
T  23969082 ctttggacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 19786506 - 19786455
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19786506 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 19877874 - 19877923
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 456  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  19877874 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 19877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 9186841 - 9186903
Alignment:
Q  289 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgac 352  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||| ||| |||||||||||||||    
T  9186841 tcccctagtgcacgaagcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 41456142 - 41455741
Alignment:
Q  14 acctgtgtatatctacatacaacttaactaca-catatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    |||||||||||||||||||||||| |||||   ||||| |||||||||||||||||||||| || | | |||||| |||||||| |||||||| ||||||    
T  41456142 acctgtgtatatctacatacaactcaactaatgcatatgtttcatatgacttactactccgtaact-caaacaattcagaacattcacaattatttataa 41456044  T
Q  113 ttatgcacatacatcaatttcattcaataaattatatattcacttgat-ttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacc 211  Q
    |||||| | ||||||||||||||||||||  || ||||||||||| || ||| |||||||| ||||| || ||| ||||||| ||| |||||||||  ||    
T  41456043 ttatgcgcttacatcaatttcattcaatag-ttgtatattcacttaatcttcctactcaattatctccaacatttactaacaccaatcaattcgattgcc 41455945  T
Q  212 agcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaa 311  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||   |  ||  |||| ||||| ||||||||||| ||||| |||||| |     
T  41455944 agcttgttctagtaggattctgatacctatactaggattatacaagttaaagaggaagttaaagaacgctcaggaagtcccctcatgcactaagcaacag 41455845  T
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgcttagggtt 410  Q
    |||| ||| ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||| || |    
T  41455844 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggt 41455745  T
Q  411 cgct 414  Q
    ||||    
T  41455744 cgct 41455741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 18914193 - 18914590
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattat 116  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||| || ||| |||||||||||||||||||||||||||||||||||    
T  18914193 tgtgtatatctacatacaacttaacaatacatatgtttcatatgacttacaactccgcaa-ttccaacaatccagaacatacacaattaattataattat 18914291  T
Q  117 gcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagctt 216  Q
    || |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||  |    
T  18914292 gctcatacatcaatttcattcaacataatatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaactaattccatcaatagagt 18914391  T
Q  217 gttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattca 315  Q
    ||| |||||||||| || |   |||| || |||||||||||||  | |||| ||| |   |||||||| | | ||||||  ||||||| ||||||||||     
T  18914392 gttttagtaggattatg-tgtatatataaaggttatacaagttggaagaaatattattatatgctcaaaaggatcccctaatgcacgaggcaaaaattc- 18914489  T
Q  316 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    ||||| |||||||||||| ||| ||||||||||||||  |   |||| ||||||||||||||||| |||  ||  |||||| ||||||| | ||||||||    
T  18914490 aaaagtggctgactaagg-tcatcttcgcttaagcgatggcaggttcgcttaagcgaccggcttatagagagttggggttccgctcgctaaaggttcgct 18914588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 312 - 452
Target Start/End: Complemental strand, 55499798 - 55499658
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    ||||||||| |||||||||||    ||||||||||||||||   |||||| |||||||||||||||||||| | |||| ||||||||||||||| |||||    
T  55499798 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtaagtctaggttctgctcgcttacggttc 55499699  T
Q  412 gcttgagcgaacttctaacagaatcaaaacggtttttcgct 452  Q
    | |||||||||||  |  ||||||||||  |||||||||||    
T  55499698 gtttgagcgaactcttggcagaatcaaattggtttttcgct 55499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 16802139 - 16802029
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    ||||||||| |||| |||||||   ||||||||||| |||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| |||||    
T  16802139 ttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 16802040  T
Q  412 gcttgagcgaa 422  Q
    |||||||||||    
T  16802039 gcttgagcgaa 16802029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 221 - 403
Target Start/End: Complemental strand, 13324562 - 13324381
Alignment:
Q  221 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 319  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13324562 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13324465  T
Q  320 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgct 403  Q
    | ||||||||||||||||  ||||||||||||  | | | || |||||||||| ||||| ||||| || |||||| ||||||||    
T  13324464 gtggctgactaaggctcagctcgcttaagcgaaggctggctcgcttaagcgactggcttgcagaaagtttgggttttgctcgct 13324381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 455
Target Start/End: Original strand, 24192274 - 24192418
Alignment:
Q  322 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggtt-----------ctgctcgcttagggtt 410  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||           | | ||||| | ||||    
T  24192274 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcaactcacttacggttcgctcacggtt 24192373  T
Q  411 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  24192374 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 18136174 - 18136117
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 139  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18136174 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 18136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 221 - 352
Target Start/End: Complemental strand, 13302974 - 13302844
Alignment:
Q  221 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 319  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13302974 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13302877  T
Q  320 gaggctgactaaggctcacttcgcttaagcgac 352  Q
    | ||||||||||||||||  |||||||||||||    
T  13302876 gtggctgactaaggctcagctcgcttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 352
Target Start/End: Complemental strand, 13313650 - 13313520
Alignment:
Q  221 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 319  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| ||  ||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13313650 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttaaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13313553  T
Q  320 gaggctgactaaggctcacttcgcttaagcgac 352  Q
    | ||||||||||||||||  |||||||||||||    
T  13313552 gtggctgactaaggctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 18129660 - 18129607
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcat 135  Q
    |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  18129660 aacaattcagaacattcacaattaattataattatgctcgtacatcaatttcat 18129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 414
Target Start/End: Original strand, 14865216 - 14865319
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcga-cagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 410  Q
    |||| ||| |||||||||||  |||| ||||||||||||| | | |||||| ||||||||||| ||||| || |||||||||||| | ||||||| || |    
T  14865216 ttcagaaaaaggctgactaacactcagttcgcttaagcgaacggctagttcgcttaagcgaccagcttagagtaggtctgggttcagttcgcttacgggt 14865315  T
Q  411 cgct 414  Q
    ||||    
T  14865316 cgct 14865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 10390083 - 10390034
Alignment:
Q  408 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 457  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10390083 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 10415172 - 10415123
Alignment:
Q  408 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 457  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10415172 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 10421842 - 10421793
Alignment:
Q  408 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 457  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10421842 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 12034072 - 12034007
Alignment:
Q  357 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 422  Q
    ||||| ||||||||||| |||||||| |||||||||||  | ||||||| || |||||| ||||||    
T  12034072 agttcgcttaagcgaccagcttacagtaggtctgggtttagttcgcttacgggtcgcttaagcgaa 12034007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 18136306 - 18136249
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 73  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  18136306 tgtgtatatctacatacaacttaaccatgcatatgttttcatatgacttacaactccg 18136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 9533232 - 9533335
Alignment:
Q  87 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 186  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||  |||||||||||||||||||  ||||||    
T  9533232 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttagtttcatactcaatcatctc-caaattc 9533330  T
Q  187 actaa 191  Q
    |||||    
T  9533331 actaa 9533335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 18129792 - 18129736
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacata-tatttcatatgacttactactcc 72  Q
    ||||||||||||||||||||||||| |  |||| | ||||||||||||||| |||||    
T  18129792 tgtgtatatctacatacaacttaaccatgcatattttttcatatgacttacaactcc 18129736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 110939 - 111284
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||| | || || | ||||||||||| |||||||||| |||||    
T  110939 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactcc-acaactcga-caatccagaacctacacaattatttata 111036  T
Q  112 attatgcacatacatcaatttcattcaataaattatatat--------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaatt 203  Q
    |||| ||||||||||||||  ||||| | |  ||||||||        ||||||| |||||||| |||||||||| || ||| ||||||| ||| ||||     
T  111037 attacgcacatacatcaatcacattccacatgttatatatatacatattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatc 111136  T
Q  204 cgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacga 303  Q
    | |||||| |||||||||| |||||||| | |||||| || |||||||||| |||||||||| | ||| ||||||||||||||||||||||| ||||| |    
T  111137 caatcaccggcttgttctaataggattcagttacctacaccagggttatactagttaaaggagaaattatagaatgctcaagaagtcccctcatgcacta 111236  T
Q  304 agcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 352  Q
    || || | |||| ||| |||||||||||| |||||||||||||||||||    
T  111237 agtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgac 111284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 414
Target Start/End: Complemental strand, 91881 - 91783
Alignment:
Q  316 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  91881 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 91783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 414
Target Start/End: Complemental strand, 97607 - 97509
Alignment:
Q  316 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  97607 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 97509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 111330 - 111378
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  111330 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 185 - 352
Target Start/End: Original strand, 241 - 407
Alignment:
Q  185 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 284  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  241 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 340  T
Q  285 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 352  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  341 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 185 - 352
Target Start/End: Original strand, 7386 - 7552
Alignment:
Q  185 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 284  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  7386 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 7485  T
Q  285 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 352  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  7486 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 458
Target Start/End: Original strand, 409 - 504
Alignment:
Q  374 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  409 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 458
Target Start/End: Original strand, 7554 - 7649
Alignment:
Q  374 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  7554 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 13123967 - 13123506
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||| ||||||||||||||||| |||||    
T  13123967 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caattcagaacatacacaattatttata 13123870  T
Q  112 attatgcacatacatcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaa 201  Q
    |||||||||||||||||||  |||||        ||| || ||||  |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||    
T  13123869 attatgcacatacatcaatcacattcctcatgttatacatatatacgtattcacttatttacatacacaatcaacaccaacatttactaataccaatcaa 13123770  T
Q  202 ttcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcac 301  Q
    | | |||||| |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| |||||    
T  13123769 tccaatcaccggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcac 13123670  T
Q  302 gaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 401  Q
     ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||    
T  13123669 taagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcg 13123571  T
Q  402 ctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |||           | |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  13123570 cttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 149 - 414
Target Start/End: Original strand, 13742860 - 13743121
Alignment:
Q  149 tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaaggg 248  Q
    |||||||||| |||||||| |||||| ||| || ||| ||||||| |||  ||| | |||  | ||| |||||| |||||||| | |||||| || ||||    
T  13742860 tattcacttgttttcatacacaatcacctccaacatt-actaacaccaattaatccaatcctcggctcgttctaataggattcggttacctacaccaggg 13742958  T
Q  249 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 348  Q
    |||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||||||    
T  13742959 ttatactagttaaaagaaatattatagaatgctcaagaagtcccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgcttaag 13743055  T
Q  349 cgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| | |||||| ||||||||||||||||| || |||||||||||| ||||||||| || |||||    
T  13743056 cgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgct 13743121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 12710896 - 12710496
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||| ||||||||||||||||| |||||    
T  12710896 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-ataactcga-caattcagaacatacacaattatttata 12710799  T
Q  112 attatgcacatacatcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaa 201  Q
    |||||||||||||||||||  |||||        ||| || ||||  |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||    
T  12710798 attatgcacatacatcaatcacattcctcatgttatacatatatacgtattcacttatttacatacacaatcaacaccaacatttactaataccaatcaa 12710699  T
Q  202 ttcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcac 301  Q
    | | |||||| ||||||| || |||| ||||  |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| |||||    
T  12710698 tccaatcaccggcttgttataataggcttcttctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcac 12710599  T
Q  302 gaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 401  Q
     ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||    
T  12710598 taagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcg 12710500  T
Q  402 ctta 405  Q
    ||||    
T  12710499 ctta 12710496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 239 - 461
Target Start/End: Original strand, 16676623 - 16676845
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  16676623 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 16676721  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  16676722 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 16676821  T
Q  438 aaacggtttttcgctcacaggttc 461  Q
    ||| ||||||||||| ||||||||    
T  16676822 aaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 239 - 461
Target Start/End: Original strand, 17650859 - 17651081
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  17650859 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 17650957  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  17650958 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 17651057  T
Q  438 aaacggtttttcgctcacaggttc 461  Q
    ||| ||||||||||| ||||||||    
T  17651058 aaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 13742686 - 13742803
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    |||||||||||||| ||||||||||  ||||  |||||| ||||||||||||||||||||| | || || |||||||||||||||||||||||| |||||    
T  13742686 aacctgtgtatatcaacatacaactcgactattacatatgtttcatatgacttactactcc-acaactcaaacaatccagaacatacacaattatttata 13742784  T
Q  112 attatgcacatacatcaat 130  Q
    ||||||| |||||||||||    
T  13742785 attatgctcatacatcaat 13742803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 458
Target Start/End: Original strand, 13006706 - 13006901
Alignment:
Q  274 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  13006706 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 13006804  T
Q  374 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  13006805 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 13006901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 383
Target Start/End: Original strand, 46625166 - 46625403
Alignment:
Q  145 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 244  Q
    |||||||||| ||| |||||||||||||||| |  |||||||||||   ||||||||||| || ||||   ||||  |||||||||  | | | |||||     
T  46625166 tatatattcatttggtttcatactcaatcatattcaaaattcactatattcaaccaattcaattaccaatgtgtttcagtaggatttag-tgcatatacc 46625264  T
Q  245 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 343  Q
    ||||| ||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||| ||||| |||||| || ||||||||||| |  |||||||    
T  46625265 agggtcatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacaaaa-ttcaaagagtggctgactaagacctacttcgc 46625363  T
Q  344 ttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
    ||||||||| | | | || ||||||||||| |||||||||    
T  46625364 ttaagcgacggctggctcgcttaagcgacctgcttacaga 46625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 124 - 383
Target Start/End: Original strand, 13678649 - 13678906
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| ||||||||| | | ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  13678649 catcaagttcattcaacatagtatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 13678747  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    |||||||| | | | |||| || |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |    
T  13678748 taggattcag-tgcatatataaaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtg 13678845  T
Q  323 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  13678846 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 13678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 11390020 - 11389910
Alignment:
Q  312 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 410  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||||| || |||| | |||||||||| ||||||||| ||||    
T  11390020 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgaccgactcacagtaagtctgggttccgctcgcttacggtt 11389922  T
Q  411 cgcttgagcgaa 422  Q
    ||||||||||||    
T  11389921 cgcttgagcgaa 11389910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 13006489 - 13006604
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  || || |||||| | | ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  13006489 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 13006586  T
Q  113 ttatgcacatacatcaat 130  Q
    ||||||||||||||||||    
T  13006587 ttatgcacatacatcaat 13006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 416
Target Start/End: Complemental strand, 20311709 - 20311631
Alignment:
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 416  Q
    ||||||||||||||| | ||| || |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||    
T  20311709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgcttacggttcgcttg 20311631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 458
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  323 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggtt 410  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  411 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    |||||||||||| ||   |||||||||||| |||||||||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 11383554 - 11383440
Alignment:
Q  289 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||| |||| |||| | ||    
T  11383554 tcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacagtaagt 11383457  T
Q  388 ctgggttctgctcgctt 404  Q
    |||||||| ||||||||    
T  11383456 ctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 414
Target Start/End: Original strand, 16090457 - 16090559
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16090457 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16090556  T
Q  412 gct 414  Q
    |||    
T  16090557 gct 16090559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 14320315 - 14320243
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 384  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||||||| ||||||    
T  14320315 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaa 14320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 18607248 - 18607339
Alignment:
Q  87 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctc 178  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||    
T  18607248 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc 18607339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 21231643 - 21231554
Alignment:
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 427  Q
    |||||||||||||||    ||||  ||||||||||| ||| |||||| ||  |||||| ||||||| | |||||||||||||||||||||    
T  21231643 cttcgcttaagcgacgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctgacggttcgcttgagcgaacttct 21231554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 147453 - 147556
Alignment:
Q  87 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 186  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | || || |||||||| |||||||||||||||||||  ||||||    
T  147453 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtacatgttcacttggtttcatactcaatcatctc-caaattc 147551  T
Q  187 actaa 191  Q
    |||||    
T  147552 actaa 147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 2464758 - 2464838
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  2464758 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 2464838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 3858087 - 3858007
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  3858087 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 3858007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 456
Target Start/End: Complemental strand, 3858003 - 3857953
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatc-aaaacggtttttcgctcaca 456  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||||||    
T  3858003 ggttcgcttgagcgaactttgaacagaatcaaaaatggtttttcgctcaca 3857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 16475983 - 16475929
Alignment:
Q  87 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaata 141  Q
    ||||||| ||||||||||||| ||||| |||| |||||||| | |||||||||||    
T  16475983 tccagaaaatacacaattaatcataatcatgctcatacatcgagttcattcaata 16475929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 414
Target Start/End: Complemental strand, 29181780 - 29181690
Alignment:
Q  324 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    ||||||||  |||| || ||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  29181780 ctgactaacactcagtttgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttatgggtcgct 29181690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 2966383 - 2966431
Alignment:
Q  357 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 405  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  2966383 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 2966431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 12710483 - 12710435
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |||||||||||||||||||   |||||||||||| ||||||| ||||||    
T  12710483 ggttcgcttgagcgaactttggacagaatcaaaatggtttttggctcac 12710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 13318007 - 13318051
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacat 126  Q
    ||||||||||||  |||||||||||| |||||||||| |||||||    
T  13318007 aacaatccagaaattacacaattaatcataattatgcgcatacat 13318051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 20907086 - 20907038
Alignment:
Q  357 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 405  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  20907086 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 20907038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 458
Target Start/End: Complemental strand, 8046893 - 8046420
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    |||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||| | || || |  |||||| | |||||||||||| |||||    
T  8046893 aacctgtgtatatctacatacaactcgactattacatatatttcatatgacttactactcc-acaactc-agtaatccaaatcatacacaattatttata 8046796  T
Q  112 attatgcacatacatcaatttcattcaa-----------------taaat-tatatattcacttgatttcatactcaatcatctcaaaaattcactaaca 193  Q
    |||||||||| ||||||||  ||||| |                 || || |||||||||||||| |||||||| |||||||||| || ||| |||||||    
T  8046795 attatgcacacacatcaatcacattccacatgttatatatatatatatatatatatattcacttgttttcatacacaatcatctccaacatttactaaca 8046696  T
Q  194 tcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccc 293  Q
     ||| |||| | ||| || |||||||||| |||||||| | |||||| || |||||||||| ||||||||   |  || |||||||||||||||||||||    
T  8046695 ccaatcaatccaatcgccggcttgttctaataggattcggttacctacaccagggttatactagttaaagaggaagttatagaatgctcaagaagtcccc 8046596  T
Q  294 tcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggt 393  Q
    || ||||| ||| || | |||| ||| ||||||||||||||||||||||||||||||||   ||| || |||||||||||  |||| || ||||||||||    
T  8046595 tcatgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgcttaagcgacgtctagctcgcttaagcgaccaacttatagtaggtctgggt 8046496  T
Q  394 tctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    || | ||||||           | |||||||||||||||||||   |||||||||||| |||||||||||||||||    
T  8046495 tcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 8046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 461
Target Start/End: Original strand, 15407485 - 15407608
Alignment:
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    ||||||||||||||| |  ||||| ||||||||||||||| |||||| |||| ||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  15407485 cttcgcttaagcgacggccagttcgcttaagcgaccggctcacagaaagtctaggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 15407584  T
Q  438 aaacggtttttcgctcacaggttc 461  Q
    ||| ||||||||||| || |||||    
T  15407585 aaatggtttttcgcttacgggttc 15407608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 424
Target Start/End: Original strand, 14486052 - 14486154
Alignment:
Q  322 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 421  Q
    ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||  || ||||||| ||||||| | |||||||||||||||    
T  14486052 ggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggttcgcttgagcga 14486151  T
Q  422 act 424  Q
    |||    
T  14486152 act 14486154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 14555938 - 14555881
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 139  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  14555938 aacaatccagaacaaacacaattaattataattatgctcatacatcaatttcattcaa 14555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 373
Target Start/End: Original strand, 11847397 - 11847537
Alignment:
Q  233 gatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaa 331  Q
    |||||||||||||| |||||||||| || | |||||| ||   ||| ||||| | | |||||| |||||| |||||||  |||| |||||||||||||||    
T  11847397 gatacctatacaagagttatacaagctagaagaaacacttacaaatactcaaaagggtcccctagtgcacaaagcaaag-ttcagaaagaggctgactaa 11847495  T
Q  332 ggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    ||||||  ||||||||||||| | |||||| |||||||||||    
T  11847496 ggctcagctcgcttaagcgacgggtagttcgcttaagcgacc 11847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 14485975 - 14486037
Alignment:
Q  221 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 284  Q
    |||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  14485975 tagtaggatt-tgatacctatacaagggttatacaagctgaaagaaacattttagaatgctcaa 14486037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 53483022 - 53483171
Alignment:
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 408  Q
    ||||||||||||| |||||||||||||||||| |  ||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  53483022 aggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 53483121  T
Q  409 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  53483122 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 414
Target Start/End: Complemental strand, 16147514 - 16147412
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16147514 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16147415  T
Q  412 gct 414  Q
    |||    
T  16147414 gct 16147412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 8834185 - 8834297
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    ||||||| ||||||||||||| || |||||||||||||| |||||| | | | | || ||||| |||||||||| |||||||| ||||||||||| |       
T  8834185 tatacaaaggttatacaagttgaaagaaacattttagaacgctcaaaaggattctctagtgcatgaagcaaaaa-tcaaaaagtggctgactaagacctt 8834283  T
Q  338 cttcgcttaagcga 351  Q
    ||||||||||||||    
T  8834284 cttcgcttaagcga 8834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 405
Target Start/End: Original strand, 27905613 - 27905729
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||  | ||| || ||||||||| | ||| ||| |||||    
T  27905613 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgatcagctcacaaaaggt 27905711  T
Q  388 ctgggttctgctcgctta 405  Q
      ||||| ||||||||||    
T  27905712 tggggttttgctcgctta 27905729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 15244566 - 15244658
Alignment:
Q  291 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |   ||||| ||||||||| | |   || |||||||||||||||||||||    
T  15244566 ccctagtgcacgaagcaaaatttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacaga 15244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 18212523 - 18212623
Alignment:
Q  90 agaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcact 189  Q
    |||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||    
T  18212523 agaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcact 18212621  T
Q  190 aa 191  Q
    ||    
T  18212622 aa 18212623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 413
Target Start/End: Original strand, 13887086 - 13887258
Alignment:
Q  241 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 338  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887086 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13887183  T
Q  339 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 413  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13887184 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13887258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 413
Target Start/End: Original strand, 13887943 - 13888115
Alignment:
Q  241 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 338  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887943 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13888040  T
Q  339 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 413  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13888041 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13888115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 15307415 - 15307563
Alignment:
Q  239 tatacaagggttatacaagtt---aaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggc 334  Q
    ||||||| |||||||||||||   |||  |||||||||| ||||||| | | | | |||| ||||||||||||||  ||| ||||| ||||||||||| |    
T  15307415 tatacaaaggttatacaagttgaaaaaaaaaacattttaaaatgctcgaaaggattccctagtgcacgaagcaaagtttcgaaaagtggctgactaagac 15307514  T
Q  335 tcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
       ||||||||||||||  | | | || |||||||||||| ||||||||    
T  15307515 cttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacaga 15307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 9628 - 9167
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||||||||||||| ||||||| |||||    
T  9628 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caatccagaacatatacaattatttata 9531  T
Q  112 attatgcacatacatcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaa 201  Q
    || ||||||||||||||||  ||||||       ||| || ||||  |||||||||  |||||||| |||||| | | || ||| |||||   ||| |||    
T  9530 atcatgcacatacatcaatcacattcatcatgttatacatatatacgtattcacttattttcatacacaatcaacaccaacatttactaatgccaatcaa 9431  T
Q  202 ttcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcac 301  Q
    | |  ||||| |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  ||  |||||||||||||||||||||| |||||    
T  9430 tccagtcaccggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttacagaatgctcaagaagtcccctcatgcac 9331  T
Q  302 gaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcg 401  Q
     ||| |||| || | ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||    
T  9330 taagtaaaagtttagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcg 9232  T
Q  402 ctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |||           | |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  9231 cttatgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 23865615 - 23866026
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactaca-catatatttcatat-gacttactactccgaaaattctaacaatccagaacatacacaattaattat 110  Q
    ||||||||||||||||||||||||| |||||   |||||||||||||| |||||||||||||| || |   |||||| ||||||||||||||||| ||||    
T  23865615 aacctgtgtatatctacatacaactcaactaatgcatatatttcatattgacttactactccgtaactc--aacaattcagaacatacacaattatttat 23865712  T
Q  111 aattatgcacatacatcaatttcattcaataaattata----------tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaacca 200  Q
    ||||||||||||||||||||  |||||   |  |||||          |||||||||  || ||||| ||||||   | || ||| ||||| | ||| ||    
T  23865713 aattatgcacatacatcaatcacattcctcatgttatacatatacacgtattcacttatttacatacacaatcaataccaacatttactaataccaatca 23865812  T
Q  201 attcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgca 300  Q
    || | |||||| |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||    
T  23865813 atccaatcaccggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgca 23865912  T
Q  301 cgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctc 400  Q
    | ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||    
T  23865913 ctaagtaatagttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttc 23866012  T
Q  401 gcttagggttcgct 414  Q
    ||||| || |||||    
T  23866013 gcttacgggtcgct 23866026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 19902924 - 19902808
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || ||  ||||||||||||||||||||||| |||||    
T  19902924 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactc-gacaatccagaacatacacaattatttata 19902827  T
Q  112 attatgcacatacatcaat 130  Q
    || ||||||||||||||||    
T  19902826 atcatgcacatacatcaat 19902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 461
Target Start/End: Complemental strand, 14057271 - 14057148
Alignment:
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    ||||||||||||||| | ||| || ||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||||||||||| |  ||||||||    
T  14057271 cttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttatggcagaatca 14057172  T
Q  438 aaacggtttttcgctcacaggttc 461  Q
    ||| |||||||| ||||| |||||    
T  14057171 aaatggtttttcactcacgggttc 14057148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 461
Target Start/End: Original strand, 25111385 - 25111508
Alignment:
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    ||||||||||||||| |  ||||| |||||||||||| || |||||| |||||||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  25111385 cttcgcttaagcgacggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 25111484  T
Q  438 aaacggtttttcgctcacaggttc 461  Q
    ||| ||||||||||| || |||||    
T  25111485 aaatggtttttcgcttacgggttc 25111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 19988045 - 19987990
Alignment:
Q  84 caatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 139  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  19988045 caatccagaacatacacaattaattacaattatgctcatacatcaatttcattcaa 19987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 416
Target Start/End: Original strand, 18613409 - 18613697
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| |||||||||   | ||||| ||||| || ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||  |  ||| ||    
T  18613409 catcaagttcattcaacgtagtatatgttcacatggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaagtgtttc-ag 18613506  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    |||||||| | |   |||| || ||||||||||||| || | ||||||||  ||||||||||| | |||||| |||||||| |||||  ||||||| | |    
T  18613507 taggattcag-tgtatatataaaggttatacaagttgaaaggaacatttttaaatgctcaagaggatcccctagtgcacgaggcaaag-ttcaaaa-gtg 18613603  T
Q  323 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 416  Q
    || |||||||| ||| ||||||||||||||| | | |||| ||||||||||| |||||||||  ||  |||||| ||||||| | ||||||||||    
T  18613604 gccgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggttcgcttg 18613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 414
Target Start/End: Complemental strand, 24321376 - 24321252
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  24321376 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 24321279  T
Q  388 ctgggttctgctcgcttagggttcgct 414  Q
    |||||||| | ||||||| || |||||    
T  24321278 ctgggttcagttcgcttacgggtcgct 24321252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 21931018 - 21931187
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctga-ctaaggct 335  Q
    ||||||| ||||||||||||| || ||||||||||||||||||| ||| |  | |||| ||| | |||||||||  |||||||| |||||| | |||||     
T  21931018 tatacaaaggttatacaagttgaaagaaacattttagaatgctc-agatggattccctagtggaggaagcaaaa--tcaaaaagtggctgaccaaaggcc 21931114  T
Q  336 cacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 408  Q
      ||||||||||||||  | | ||||||||||||||||| ||||||||  ||  | |||||||||||| ||||    
T  21931115 ttcttcgcttaagcgaaggctggttcacttaagcgaccgacttacagagagttggtgttctgctcgctaaggg 21931187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Original strand, 17054009 - 17054060
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  17054009 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 17054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 20005473 - 20005423
Alignment:
Q  88 ccagaacatacacaattaattataattatgcacatacatcaatttcattca 138  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||    
T  20005473 ccagaaaatacacaatcaatcataatcatgcacatacatcaagttcattca 20005423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 20005612 - 20005563
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatatatttcatatgacttac 66  Q
    ||||||||||||||||||||||||| |  ||||||| | |||||||||||    
T  20005612 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttac 20005563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 17053780 - 17053870
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaatta 105  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||| ||||||||| | || || |||||||||| || ||||||||||    
T  17053780 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacatactactcc-acaactcaaacaatccag-acttacacaatta 17053870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 23866030 - 23866078
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |||||||||||||||||||   |||||||||||| ||||||||| ||||    
T  23866030 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgatcac 23866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 145 - 414
Target Start/End: Original strand, 324 - 592
Alignment:
Q  145 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 244  Q
    |||||||||||||| |||||||| | |||||||| || ||| ||||||| ||| |||| | |||||  |||||||||| |||||||| | |||||| ||     
T  324 tatatattcacttgttttcatacaccatcatctccaacatttactaacaccaatcaatccaatcactggcttgttctaataggattcggttacctacacc 423  T
Q  245 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 344  Q
    | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||    
T  424 aaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgct 522  T
Q  345 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  523 taagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 153 - 269
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||| | |  || |||||||||||||||||||||||| |||||    
T  153 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactcc-acagctc-aacaatccagaacatacacaattatttata 250  T
Q  112 attatgcacatacatcaat 130  Q
    |||||||||| ||||||||    
T  251 attatgcacacacatcaat 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 239 - 458
Target Start/End: Original strand, 10610 - 10829
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgct-caagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    |||| ||||||||||||||||||| |  |||| ||  |||||| ||||   ||||||  ||||||| |||||  ||||||||| |||||||||||    |    
T  10610 tatataagggttatacaagttaaaagggacatgtttaaatgctacaagggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagatcaa 10708  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttagggttcgcttgagcgaacttctgacagaatca 10808  T
Q  438 aaacggtttttcgctcacagg 458  Q
    ||| |||||||||||||||||    
T  10809 aaatggtttttcgctcacagg 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 7667 - 7517
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaa 181  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||    
T  7667 aacaacccagaacatacccaattaattataattatgctcatacatcaatttcattcaacatactatatattcacttgatttcatactcaatcatctccaa 7568  T
Q  182 aattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctg 233  Q
    ||||||||||| ||||| |||||||||||| |  | || |||||||||||||    
T  7567 aattcactaac-tcaactaattcgatcaccggagtattttagtaggattctg 7517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 7798 - 7742
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatatatttcatatgacttactactccg 73  Q
    ||||||||||||||||||||||||| |  ||||| ||||||||||||| | ||||||    
T  7798 tgtgtatatctacatacaacttaacaatgcatatgtttcatatgacttgcaactccg 7742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 234 - 423
Target Start/End: Original strand, 30194 - 30383
Alignment:
Q  234 atacctatacaagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaag 332  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||| |||| |||||||||||    
T  30194 atacctatacaagggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccctagtgcacgaagc-aaaattcagaaagtggctgactaag 30292  T
Q  333 gctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 423  Q
    |||||||||||||||||||  | | | || |||||||||||||||||||||| || | ||||  ||||||| | |||||||||||| ||||    
T  30293 gctcacttcgcttaagcgaaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcgctcacggttcgcttgagtgaac 30383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 126 - 383
Target Start/End: Complemental strand, 82082 - 81826
Alignment:
Q  126 tcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagta 225  Q
    |||| ||||||||| | | |||||||||||||| |||||||||||| ||| || ||||||||||||  |||||||||||||  ||||   ||||  ||||    
T  82082 tcaagttcattcaacataatatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaattcgactaccaatgtgtttaagta 81983  T
Q  226 ggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggc 324  Q
    |||||| | | | ||||||||||||||||||||| || ||||||||||| ||||||||| | | | |||| ||| ||||||||||| ||||||||| |||    
T  81982 ggattcag-tgcatatacaagggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctggtgtacgaagcaaaa-ttcaaaaagtggc 81885  T
Q  325 tgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
    |||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||    
T  81884 tgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacaga 81826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 414
Target Start/End: Complemental strand, 80174 - 80072
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  80174 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 80075  T
Q  412 gct 414  Q
    |||    
T  80074 gct 80072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 124 - 440
Target Start/End: Original strand, 116052 - 116366
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| ||||||||| | | ||||| |||||||||||||||||||||||||||||||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  116052 catcaagttcattcaacatagtatatgttcacttgatttcatactcaatcatctcaaaa-ttcactaaactcaactaattcgattaccaaggtgtttcag 116150  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    |||||||| | |   |||| || ||||||||| ||| || ||||||||||| ||| ||||| | | |||||| |||||||| |||||  ||||||||  |    
T  116151 taggattcag-tgtgtatataaaggttatacaggttgaaagaaacattttaaaatactcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaaatg 116248  T
Q  323 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 421  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||  ||  || ||  ||||||| | |||||||||||||||    
T  116249 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacagagagttgggatttcgctcgctaacggttcgcttgagcga 116347  T
Q  422 acttctaacagaatcaaaa 440  Q
    |||||| ||||||| ||||    
T  116348 acttctgacagaatgaaaa 116366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 427
Target Start/End: Complemental strand, 129393 - 129204
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 336  Q
    ||||||| ||||||||||||| |||||||||||| | || ||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| |      
T  129393 tatacaaaggttatacaagttgaaggaaacatttcaaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagacct 129295  T
Q  337 acttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 427  Q
     ||||||||||||||| | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | ||||||||| |||||||||||    
T  129294 tcttcgcttaagcgacggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggttcgcttaagcgaacttct 129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 427
Target Start/End: Original strand, 65265 - 65592
Alignment:
Q  99 acaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaac 198  Q
    ||||||||| ||||| || |  || |||||| ||||||||| | | |||||||||||||| |||||||||||||||  || ||||||||||||  | |||    
T  65265 acaattaataataatcatactaatgcatcaagttcattcaacatagtatatattcacttggtttcatactcaatcaaatccaaaattcactaaacttaac 65364  T
Q  199 caattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgt 297  Q
    ||||||||| ||||   |||| ||||||||||| | | | |||| ||  |||||||||||| || ||||||||||| |||| |||| | | |||||| ||    
T  65365 caattcgattaccaatgtgttttagtaggattcag-tgcatatataaaagttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccctagt 65463  T
Q  298 gcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctg 397  Q
    |||||| |||||| ||||||||| ||||||||||||    || |||||||| ||| | | |||| |||||||||||||||||||||  ||  |||||| |    
T  65464 gcacgaggcaaaa-ttcaaaaagtggctgactaaggtcttctccgcttaagtgacggctggttcgcttaagcgaccggcttacagagagttggggttccg 65562  T
Q  398 ctcgcttagggttcgcttgagcgaacttct 427  Q
    |||||| | |||||| || |||||||||||    
T  65563 ctcgctaacggttcggttaagcgaacttct 65592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 1274 - 1336
Alignment:
Q  145 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgat 207  Q
    ||||| |||||||| |||||||||||||||| || |||| |||||||  ||||||||||||||    
T  1274 tatatgttcacttggtttcatactcaatcatatccaaaactcactaaattcaaccaattcgat 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 14 - 458
Target Start/End: Original strand, 23527632 - 23528099
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || || |||||||| |  ||||||||| ||||||    
T  23527632 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaataatccaga-ctgacacaattatttataa 23527729  T
Q  113 ttatgcacatacatcaatttcattcaataaattatatat------------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaacca 200  Q
    ||||||||||||||||||  ||||| | |  ||||||||            ||||||| ||||| || ||| |||||| || ||| ||||||| ||| ||    
T  23527730 ttatgcacatacatcaatcacattccacatgttatatatatacatacatattcacttgctttcacacccaaacatctccaacatttactaacaccaatca 23527829  T
Q  201 -attcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgc 299  Q
     || | | |||| | |||||||| |||||||  | |||||| || |||||||||| ||||||||   |  ||  |||| ||||||||||||||||| |||    
T  23527830 tatccaaacaccggattgttctaataggatttggttacctacaccagggttatactagttaaagaggaagttaaagaacgctcaagaagtcccctcatgc 23527929  T
Q  300 acgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgc 398  Q
    || |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| |     
T  23527930 actaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagt 23528028  T
Q  399 tcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  23528029 tcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 22232493 - 22232436
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 139  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22232493 aacaatccagaacatacacgattaattataattatgctcatacatcaatttcattcaa 22232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 416
Target Start/End: Complemental strand, 18408685 - 18408521
Alignment:
Q  252 tacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcactt-cgcttaagc 349  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| || |||||||||    
T  18408685 tacaagttgaaaggaacatttaaaaatgctcaaaagaatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcattttcgcttaagc 18408588  T
Q  350 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 416  Q
    ||| | |||||  |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  18408587 gacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 18408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 19236294 - 19236374
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  19236294 ctcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgct 19236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 22439369 - 22439310
Alignment:
Q  363 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 422  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||    
T  22439369 cttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggttcacttaagcgaa 22439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 395
Target Start/End: Original strand, 22460506 - 22460611
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  22460506 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 22460603  T
Q  388 ctgggttc 395  Q
    ||||||||    
T  22460604 ctgggttc 22460611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 34829432 - 34829539
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||||||||||||||  |||| ||| ||| ||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  34829432 gtcccctagtgcacgaagcaaag-ttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 34829530  T
Q  388 ctgggttct 396  Q
      |||||||    
T  34829531 tggggttct 34829539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 22467130 - 22467254
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| | |||||||||||| | |||||| ||||| ||||| |||||||| ||||    
T  22467130 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagtacgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggt 22467227  T
Q  388 ctgggttctgctcgcttagggttcgct 414  Q
    |||||||| | ||||||| || |||||    
T  22467228 ctgggttcagttcgcttatgggtcgct 22467254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 20781102 - 20781192
Alignment:
Q  296 gtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||||||||||| |||| ||| |||||||||||  || | |||||||||||||| | ||| || ||||||||||| ||| ||| |||||    
T  20781102 gtgcacgaagcaaaa-ttcagaaaaaggctgactaacacttagttcgcttaagcgacgggtagctcgcttaagcgaccagctcacacaaggt 20781192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 23112546 - 23112480
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 191  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  23112546 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 23112480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 20819639 - 20819689
Alignment:
Q  408 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20819639 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 20826739 - 20826789
Alignment:
Q  408 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 458  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20826739 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20826789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 22232625 - 22232568
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 73  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  22232625 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacgactccg 22232568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 20819456 - 20819488
Alignment:
Q  237 cctatacaagggttatacaagttaaaggaaaca 269  Q
    ||||||||||||||||||||| |||||||||||    
T  20819456 cctatacaagggttatacaagctaaaggaaaca 20819488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 20826556 - 20826588
Alignment:
Q  237 cctatacaagggttatacaagttaaaggaaaca 269  Q
    ||||||||||||||||||||| |||||||||||    
T  20826556 cctatacaagggttatacaagctaaaggaaaca 20826588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 28890058 - 28889978
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28890058 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 28896762 - 28896682
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28896762 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 28910010 - 28909930
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28910010 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 28931702 - 28931622
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28931702 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 28946405 - 28946325
Alignment:
Q  334 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28946405 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28946325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 289 - 461
Target Start/End: Complemental strand, 752 - 581
Alignment:
Q  289 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||||| ||    
T  752 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagaaagt 655  T
Q  388 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 461  Q
      |||||  ||||||| | ||||||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  654 tggggtttcgctcgctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 7688 - 7605
Alignment:
Q  289 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||    
T  7688 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 462
Target Start/End: Complemental strand, 15856 - 15521
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  15856 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 15758  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    || ||||| | | | |||| || ||||||||||||| || ||||||||||  ||||||||| | | || ||| |||||||| || ||| ||| ||||| |    
T  15757 tatgattcag-tgcatatataaaggttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcctagtgcacgaggc-aaagttc-aaaagtg 15661  T
Q  323 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 421  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||| |||| |||  || ||||||  | ||||| | |||||||||||||||    
T  15660 gctgactaagg-tcatcttcgcttaagcgacggttggttcgcttaagcgaccgtcttatagagagtttgggtttcgttcgctaacggttcgcttgagcga 15562  T
Q  422 acttctaacagaatcaaaacggtttttcgctcacaggttct 462  Q
    |||||| ||| |||  ||| | ||||||||| || ||||||    
T  15561 acttctgacataatggaaatgatttttcgcttacgggttct 15521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 322 - 455
Target Start/End: Complemental strand, 15121 - 14977
Alignment:
Q  322 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggtt 410  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||           | ||||    
T  15121 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcagctcgcttacggttcgctcacggtt 15022  T
Q  411 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  15021 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 1117 - 1261
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | |     
T  1117 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccct 1215  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
    ||||||||||||||| | | | || ||||||||||||||| |||||    
T  1216 cttcgcttaagcgacggctggctcgcttaagcgaccggctcacaga 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 461
Target Start/End: Original strand, 18712098 - 18712270
Alignment:
Q  289 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    |||||| |||||||| |||||| ||||||| | |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||| |||||||||| ||    
T  18712098 tcccctagtgcacgaggcaaaagttcaaaaggtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaaagt 18712196  T
Q  388 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 461  Q
      |||||| ||||||| | ||| ||||| ||||||||||| ||||||| |||  | ||||||||| || |||||    
T  18712197 tggggttccgctcgctaacggtacgcttaagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 18712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 414
Target Start/End: Original strand, 41111214 - 41111354
Alignment:
Q  274 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  41111214 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41111312  T
Q  374 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 414  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  41111313 agcttacagtaggttctgggttcagttcgcttacgggtcgct 41111354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 20941714 - 20941657
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 139  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20941714 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 20941657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 41110997 - 41111112
Alignment:
Q  14 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 112  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  41110997 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 41111094  T
Q  113 ttatgcacatacatcaat 130  Q
    ||||||||||||||||||    
T  41111095 ttatgcacatacatcaat 41111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 21710167 - 21710292
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||| ||||||||| | |||  ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21710167 gtcccctagtgtacgaagcaaga-ttcggaaaaaggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21710265  T
Q  388 ctgggttctgctcgcttagggttcgct 414  Q
    |||||||| | ||||||| ||||||||    
T  21710266 ctgggttcagttcgcttatggttcgct 21710292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 373
Target Start/End: Original strand, 19961472 - 19961622
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 320  Q
    ||||||||| |||| ||||||||||||||||||||| |||| ||||||  | | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19961472 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacgtaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19961569  T
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||||||||||||||||  ||||||||||||  | ||| || |||||||||||    
T  19961570 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgacc 19961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 410
Target Start/End: Complemental strand, 22030504 - 22030333
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    ||||||| ||||||||||||| || |||||||| |||||||||||| | | |  ||| ||||| |||||||||||| |||||| ||||||||||| |       
T  22030504 tatacaaaggttatacaagttgaaagaaacattatagaatgctcaaaaggatttcctagtgcaagaagcaaaaatt-aaaaagtggctgactaagacctt 22030406  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 410  Q
    ||||||||||||||  | | | || |||||||||| ||||||||||  ||  | |||||||||||| ||||||    
T  22030405 cttcgcttaagcgaaggctggctcgcttaagcgactggcttacagagagttggtgttctgctcgctaagggtt 22030333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 414
Target Start/End: Complemental strand, 20851838 - 20851714
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  20851838 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 20851741  T
Q  388 ctgggttctgctcgcttagggttcgct 414  Q
    |||||||| | ||||||| || |||||    
T  20851740 ctgggttcagttcgcttatgggtcgct 20851714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 21705625 - 21705749
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21705625 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21705722  T
Q  388 ctgggttctgctcgcttagggttcgct 414  Q
    |||||||| | ||||||| || |||||    
T  21705723 ctgggttcagttcgcttacgggtcgct 21705749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 414
Target Start/End: Complemental strand, 20858434 - 20858341
Alignment:
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20858434 aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20858341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 352
Target Start/End: Original strand, 11157328 - 11157554
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||  ||| ||||||||  || || |||||||| ||||   ||||  ||    
T  11157328 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatcttcaaa-ttcactaaactcgactaattcgattaccaaagtgtttcag 11157426  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    |||||||  | |   |||| |||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| || ||| ||||||||| |    
T  11157427 taggatttag-tgtatatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggc-aaagttcaaaaagtg 11157524  T
Q  323 gctgactaaggctca-cttcgcttaagcgac 352  Q
    | ||||||||| ||| |||||||||||||||    
T  11157525 gttgactaagg-tcatcttcgcttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 20438327 - 20438224
Alignment:
Q  87 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 186  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  20438327 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 20438229  T
Q  187 actaa 191  Q
    |||||    
T  20438228 actaa 20438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 23631145 - 23631200
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatatatttcatatgacttactactcc 72  Q
    ||||||||||||||||||||||||| |  ||||||| | ||||||||||| |||||    
T  23631145 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaactcc 23631200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 20941846 - 20941789
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 73  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  20941846 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaactccg 20941789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 41111358 - 41111407
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 456  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  41111358 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 41111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 461
Target Start/End: Complemental strand, 35010 - 34861
Alignment:
Q  312 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 410  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||   ||||| ||||||| | ||||    
T  35010 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctcgctgacggtt 34912  T
Q  411 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 461  Q
    ||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  34911 cgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 34861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 448
Target Start/End: Complemental strand, 15633 - 15475
Alignment:
Q  289 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||  | ||| ||||||||||||| |||| |||||| ||    
T  15633 tcccctagtgcacgaggcaaat-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagctcacttaagcgactggctcacagaaagt 15536  T
Q  388 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggttttt 448  Q
      |||||| ||||||| | |||||||||||||||||||||  |||||| |||| |||||||    
T  15535 tggggttccgctcgctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 15475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 448
Target Start/End: Complemental strand, 23328 - 23192
Alignment:
Q  312 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 410  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||| || ||||||| |||||| ||  ||||||  |||||| | ||||    
T  23328 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggttcaactcgctgacggtt 23230  T
Q  411 cgcttgagcgaacttctaacagaatcaaaacggttttt 448  Q
    |||||||||||||||||  |||||| |||| |||||||    
T  23229 cgcttgagcgaacttctggcagaatgaaaatggttttt 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 352
Target Start/End: Original strand, 1607 - 1813
Alignment:
Q  145 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 244  Q
    |||||||||||||| ||||||||||| | || || ||||||||||||  |||||||| ||||| ||||   ||||| |||||||||| |     |||| |    
T  1607 tatatattcacttggtttcatactcactgatatccaaaattcactaaattcaaccaactcgattaccaatgtgttc-agtaggattcaggggtatatata 1705  T
Q  245 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 342  Q
    | ||| ||||||||| || ||||||||||| ||||||||| | | |||||| |||||||| || ||||||||||||| |||||||||||| ||| |||||    
T  1706 aaggtcatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaggc-aaaattcaaaaagtggctgactaagg-tcatcttcg 1803  T
Q  343 cttaagcgac 352  Q
    ||||||||||    
T  1804 cttaagcgac 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 124 - 383
Target Start/End: Original strand, 542 - 799
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| ||||||||| | | ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  542 catcaagttcattcaacatagtatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 640  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    |||||||| | | | |||| || |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |    
T  641 taggattcag-tgcatatataaaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtg 738  T
Q  323 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  739 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 6907 - 7024
Alignment:
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| | ||||||||||| || | ||  ||||||||    
T  6907 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgattcgcttgagcaaattcctggcagaatca 7006  T
Q  438 aaacggtttttcgctcac 455  Q
    ||| ||||  ||||||||    
T  7007 aaaaggttcctcgctcac 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 324 - 452
Target Start/End: Complemental strand, 4281 - 4153
Alignment:
Q  324 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 423  Q
    ||||||||||   ||||||||||||||||   |||||| ||||||||| | |||||||| | |||||||||||||||| ||| |||||||||||||||||    
T  4281 ctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcagcttacagtaagtctgggttctgctcgattacggttcgcttgagcgaac 4182  T
Q  424 ttctaacagaatcaaaacggtttttcgct 452  Q
    |  |  ||||||||||  |||||||||||    
T  4181 tcttggcagaatcaaattggtttttcgct 4153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 18024 - 17972
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 134  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18024 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 23657 - 23605
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 134  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23657 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 416
Target Start/End: Original strand, 16083 - 16247
Alignment:
Q  252 tacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagc 349  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||    
T  16083 tacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagc 16180  T
Q  350 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 416  Q
    ||| | ||| || |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  16181 gacggttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 16247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 414
Target Start/End: Complemental strand, 4377 - 4253
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| |||||||||||||  | |||||| ||||||||||| |||||||| ||||    
T  4377 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggt 4280  T
Q  388 ctgggttctgctcgcttagggttcgct 414  Q
    |||||||| | ||||||| || |||||    
T  4279 ctgggttcagttcgcttacgggtcgct 4253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 124 - 424
Target Start/End: Complemental strand, 102787 - 102489
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 223  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||| ||| || |||||  ||||| |||||||| ||||   ||||   |    
T  102787 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctccaaattt-actaaactcaactaattcgattaccaaggtgtttctg 102689  T
Q  224 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 322  Q
    ||||| || | |   |||| || ||||||||| ||| || ||||| ||||| ||| ||||| | | |||||| |||||||| ||||   ||||||||| |    
T  102688 taggactcag-tgtgtatataaaggttatacaggttgaaagaaaccttttaaaatactcaaaaggatcccctagtgcacgaggcaagg-ttcaaaaagtg 102591  T
Q  323 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 421  Q
    || |||||||| ||| ||||||||||||||  | | |||| |||||||||||| ||||||||| ||  |||||| ||||||| | |||||||||||||||    
T  102590 gccgactaagg-tcatcttcgcttaagcgatggctggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggttcgcttgagcga 102492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 174557 - 174440
Alignment:
Q  13 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 111  Q
    ||||| ||||| ||||||||||| |  ||||  |||||| ||||| |||||||||| ||||| || | | |||||||||||||||||||||||| |||||    
T  174557 aacctttgtatctctacatacaattcgactattacatatttttcaaatgacttactgctccgcaact-caaacaatccagaacatacacaattatttata 174459  T
Q  112 attatgcacatacatcaat 130  Q
    |||||||||||||||||||    
T  174458 attatgcacatacatcaat 174440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 373
Target Start/End: Complemental strand, 493800 - 493650
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 320  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| |||     
T  493800 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 493703  T
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  493702 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 493650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 525062 - 525205
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 336  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||| ||| |  | |||| ||||| ||| |||||  |||||| | ||||||| |||||      
T  525062 tatacaaaggttatacaagttgaaagaaacatttcagaatgctc-agatggattccctagtgcaggaaacaaaa--tcaaaatgtggctgaccaaggcct 525158  T
Q  337 acttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 383  Q
     ||||||||||||||  | | |||| |||||||||||| ||||||||    
T  525159 tcttcgcttaagcgaaggctggttcgcttaagcgaccgtcttacaga 525205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 1584 - 1527
Alignment:
Q  82 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 139  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1584 aacaatccagaacatacacaattaattaaaattatgctcatacatcaatttcattcaa 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 1716 - 1659
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 73  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  1716 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaactccg 1659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 3975 - 3871
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 411  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| ||||||||||||||||||||   |||||||||||||||  ||| |||||    
T  3975 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtgagtctgggttctgctcaattacggttc 3876  T
Q  412 gcttg 416  Q
    |||||    
T  3875 gcttg 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 265 - 416
Target Start/End: Original strand, 17492 - 17643
Alignment:
Q  265 aaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcac 363  Q
    |||| ||||||||||||||| | | || ||| ||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||||||  | | | || |    
T  17492 aaaccttttagaatgctcaaaaggctcgcctagtgcacgaaacaaaa-ttcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgc 17590  T
Q  364 ttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 416  Q
    ||||||||||||||||||||| || ||||||  ||||||| |  |||||||||    
T  17591 ttaagcgaccggcttacagaaagtttgggtttcgctcgctcacagttcgcttg 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 387
Target Start/End: Complemental strand, 24342 - 24178
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 320  Q
    ||||||||| |||| |||| |||||||||||||||| |||| |||||| || | ||  ||||| | | |||||| ||||||||||||||  |||| ||||    
T  24342 agtaggatt-tgatgcctacacaagggttatacaagctaaaagaaacacttaaaaacactcaaaagggtcccctagtgcacgaagcaaag-ttcagaaag 24245  T
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    || ||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||| ||| |||||    
T  24244 agactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgaccagctcacaaaaggt 24178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 121200 - 121369
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  121200 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 121298  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 408  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  121299 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 121369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 132077 - 132246
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  132077 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 132175  T
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 408  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  132176 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 132246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 19166 - 19059
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 337  Q
    ||||||| ||||||| ||||| || ||||||||||| ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||||||| | |     
T  19166 tatacaaaggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgactaagaccct 19068  T
Q  338 cttcgctta 346  Q
    |||||||||    
T  19067 cttcgctta 19059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 405
Target Start/End: Original strand, 72565 - 72747
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 320  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| | |||| ||||  || || || | | ||||||  ||||||||||||||||||| ||||    
T  72565 agtaggatt-tgatacttatacaagggttatataagctaaaaggaacactttaagatactaaaaagggtcccctaatgcacgaagcaaaaattcagaaag 72663  T
Q  321 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 405  Q
     |||||||| |||||||  ||||||||||||  | ||| || ||||||||||| ||| ||| |||||  ||||| ||||||||||    
T  72664 tggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttttgctcgctta 72747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 461
Target Start/End: Complemental strand, 41236 - 41113
Alignment:
Q  338 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 437  Q
    |||||||||||||||   |||||| ||||||||| ||||| |||||||||  |||||| ||||||| |  ||||||||||||||||||| | ||||||      
T  41236 cttcgcttaagcgacgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgctgacagttcgcttgagcgaacttcaagcagaatgt 41137  T
Q  438 aaacggtttttcgctcacaggttc 461  Q
    ||| ||||||| ||| || |||||    
T  41136 aaatggttttttgcttacgggttc 41113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 352
Target Start/End: Original strand, 51552 - 51657
Alignment:
Q  247 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 345  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| |||||| |||| ||||||||||||| ||||||||||| |   ||||||||    
T  51552 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacaaagc-aaaattcaaaaagtggctgactaagaccttcttcgctt 51650  T
Q  346 aagcgac 352  Q
    |||||||    
T  51651 aagcgac 51657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 373
Target Start/End: Complemental strand, 11782 - 11631
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 319  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||| | || | || | ||||| | | |||||| ||||| ||||||||  |||| | |    
T  11782 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaaaacttaaaaaatactcaaaagggtcccctagtgcatgaagcaaag-ttcagata 11685  T
Q  320 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    ||||||||||||||||||  ||||||||||||  | |||||| |||||||||||    
T  11684 gaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgacc 11631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 423
Target Start/End: Complemental strand, 3966 - 3831
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 387  Q
    ||||||| |||||||||||||   |||||||| ||||||||||| ||||| |||||||||||||  | ||| || ||||||||||| ||| ||| || ||    
T  3966 gtcccctagtgcacgaagcaagg-ttcaaaaaaaggctgactaatgctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaagt 3868  T
Q  388 ctgggttct-gctcgcttagggttcgcttgagcgaac 423  Q
       ||| || ||||||| | |||||||||||||||||    
T  3867 tgaggtcctcgctcgctcacggttcgcttgagcgaac 3831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 10053 - 9950
Alignment:
Q  87 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 186  Q
    ||||||| ||||||||||||||||||| |  |  || |||||| |||||| || | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  10053 tccagaaaatacacaattaattataatcaaactaatgcatcaagttcattaaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 9955  T
Q  187 actaa 191  Q
    |||||    
T  9954 actaa 9950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 351
Target Start/End: Complemental strand, 11324 - 11196
Alignment:
Q  222 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 320  Q
    ||||||||| |||| |||||||||| |||||||||| ||||  ||||| || | | | ||||| | | |||||| |||||||||||||   |||| |||     
T  11324 agtaggatt-tgatgcctatacaagagttatacaagctaaaataaacacttaaaagtactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 11227  T
Q  321 aggctgactaaggctcacttcgcttaagcga 351  Q
    ||||||||||||||||| |||||||||||||    
T  11226 aggctgactaaggctcagttcgcttaagcga 11196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 18060 - 18121
Alignment:
Q  312 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 373  Q
    |||| ||| ||||||||||||||||| ||||||||||||| || ||| || |||||||||||    
T  18060 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaaaggtagctcgcttaagcgacc 18121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 6299 - 6343
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctca 283  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||    
T  6299 tatacaaaggttatacaagttgaaagaaacattttagaatgctca 6343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 1207 - 1273
Alignment:
Q  124 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 191  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  1207 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 46748 - 46685
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatatat-ttcatatgacttactactccgaaaatt 79  Q
    |||||||||||||||||||||| || |  ||||||| |||||||||||||| |||||| |||||    
T  46748 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaactccgcaaatt 46685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 51021 - 50958
Alignment:
Q  17 tgtgtatatctacatacaacttaactacacatatat-ttcatatgacttactactccgaaaatt 79  Q
    |||||||||||||||||||||| || |  ||||||| |||||||||||||| |||||| |||||    
T  51021 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaactccgcaaatt 50958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 134867 - 134924
Alignment:
Q  357 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 414  Q
    ||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 134924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 134820 - 134882
Alignment:
Q  288 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 352  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| ||||||||||||||    
T  134820 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgac 134882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 1391 - 1343
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |||||||||||||||||||   ||||||||||||  |||||||||||||    
T  1391 ggttcgcttgagcgaactttggacagaatcaaaattgtttttcgctcac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 3372 - 3328
Alignment:
Q  239 tatacaagggttatacaagttaaaggaaacattttagaatgctca 283  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||    
T  3372 tatacaaaggttatacaagttgaaagaaacatttcagaatgctca 3328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 49597 - 49645
Alignment:
Q  407 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 455  Q
    |||||| ||||||||||||   |||||||||||| ||||||||||||||    
T  49597 ggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 49645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University