View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12314_low_6 (Length: 334)
Name: NF12314_low_6
Description: NF12314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12314_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 43383487 - 43383301
Alignment:
| Q |
2 |
aagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggaggagggttaatgcctctccattcacgc |
101 |
Q |
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| T |
43383487 |
aagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggtggagggttaatgcctctccattcacgc |
43383388 |
T |
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| Q |
102 |
tcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgttc |
188 |
Q |
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| T |
43383387 |
tcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgttc |
43383301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 25870212 - 25870023
Alignment:
| Q |
1 |
caagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaa---caagttgttgtcttctgaaattaggaggagggttaatgcctctccattc |
97 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870212 |
caagtaaaagcaaagaagcagcaccttcctgttcttctggagtcacaagttgttgttgttgtcttctgaaattaggaggagggttaatgcctctccattg |
25870113 |
T |
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| Q |
98 |
acgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgtt |
187 |
Q |
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| T |
25870112 |
acgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgtt |
25870023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 43383282 - 43383170
Alignment:
| Q |
216 |
tccccacccaattccttacgcttcttcttaccagtaacattaacagaatcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
315 |
Q |
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| T |
43383282 |
tccccacccaattccttactcttcttcttaccagtaacagta------tcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
43383189 |
T |
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| Q |
316 |
tatctccacctttcatctc |
334 |
Q |
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| T |
43383188 |
tatctccacctttcatctc |
43383170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 25869970 - 25869933
Alignment:
| Q |
297 |
tgatcatcggaccaatttttatctccacctttcatctc |
334 |
Q |
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| T |
25869970 |
tgatcatcggaccaatttttatctccacctttcatctc |
25869933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 25870009 - 25869981
Alignment:
| Q |
216 |
tccccacccaattccttacgcttcttctt |
244 |
Q |
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| T |
25870009 |
tccccacccaattccttacgcttcttctt |
25869981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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